Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G43600 181 / 4e-53 AtAO3, atAO-2, AOgamma, AO3, AAO2 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) AT5G20960 179 / 1e-52 AT-AO1, AOalpha, ATAO1, ATAO, AAO1 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) AT2G27150 179 / 2e-52 AtAAO3, At-AO3, AOdelta, AAO3 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) AT1G04580 171 / 9e-50 ATAO-4, ATAO2, AAO4 ALDEHYDE OXIDASE 2, arabdopsis thaliana aldehyde oxidase 4, aldehyde oxidase 4 (.1) AT4G34900 86 / 8e-20 ATXDH2 A. THALIANA XANTHINE DEHYDROGENASE 2, xanthine dehydrogenase 2 (.1) AT4G34890 82 / 1e-18 ATXDH1 xanthine dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040474 [exp] 267 / 3e-83 AT3G43600 1555 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10019386 [exp] 208 / 1e-62 AT3G43600 1635 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10013393 [exp] 188 / 1e-55 AT3G43600 1657 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10008429 [exp] 187 / 2e-55 AT3G43600 1652 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Lus10034306 [exp] 84 / 4e-19 AT4G34890 2127 / 0.0 xanthine dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G153600 [exp] 205 / 1e-61 AT3G43600 1741 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Arabidopsis thaliana aldehyde oxidase 2, Aldehyde oxidase gamma, aldehyde oxidase 3, aldehyde oxidase 2 (.1) Potri.004G191300 [exp] 197 / 1e-58 AT2G27150 1678 / 0.0 Arabidopsis thaliana aldehyde oxidase 3, Aldehyde oxidase delta, abscisic aldehyde oxidase 3 (.1.2) Potri.009G054600 [exp] 85 / 1e-19 AT4G34890 2077 / 0.0 xanthine dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF01799 [flax] [poplar] Fer2_2 [2Fe-2S] binding domain CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10023586 pacid=23160575 polypeptide=Lus10023586 locus=Lus10023586.g ID=Lus10023586.BGIv1.0 annot-version=v1.0 ATGGACACCATCAACGGCACACGACTTGCAGAAGAACACAACAATAACAGCAGCAATAATACTCTAGTGTTTGCAATCAACAACAAGAGATTCGAGCTGA CCAACTTACACGACCCATCGACGACTCTGCTTCAATTCCTGCGTACCCAGACCAGCATCAAGAGTCCCAAGCTCGGTTGCGGGGAAGGTGGCTGCGGAGC TTGTGTGGTTCTGCTGTCCAAGTATGATTCCGAAGTCGAAAAAGTCGAAAACTTTACGGTAAGCTCCTGCCTGACGTTGCTGGGGAGTGTTCATGGATGT TCAATCACAACATCTGAAGGGATCGGCAATACTAAAGAAGAATTCCACGAAATCCACAGCAGGTTTGCTGGATTTCATGCCTCTCAGTGTGGATTCTGCA CTCCTGGAATGTGCATGTCGCTTTACGGAGCACTTGTTAACAATGGCGGTGAAAAGCTGAGTGTGATTGAAGCGGAGAAGGCCATATCAGGAAACCTCTG CAGGTACGATTAA
AA sequence Show only first row Show all	>Lus10023586 pacid=23160575 polypeptide=Lus10023586 locus=Lus10023586.g ID=Lus10023586.BGIv1.0 annot-version=v1.0 MDTINGTRLAEEHNNNSSNNTLVFAINNKRFELTNLHDPSTTLLQFLRTQTSIKSPKLGCGEGGCGACVVLLSKYDSEVEKVENFTVSSCLTLLGSVHGC SITTSEGIGNTKEEFHEIHSRFAGFHASQCGFCTPGMCMSLYGALVNNGGEKLSVIEAEKAISGNLCRYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10023586 [exp]	0	1
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	1.4	0.8472
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	3.7	0.8469
AT5G02440			unknown protein		Lus10025345 [exp]	3.9	0.8463
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011082 [exp]	6.0	0.8385
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	6.6	0.8422
AT5G52970			thylakoid lumen 15.0 kDa prote...		Lus10001399 [exp]	10.7	0.8388
AT3G11920			glutaredoxin-related (.1)		Lus10034196 [exp]	11.6	0.7664
AT1G23790			Plant protein of unknown funct...		Lus10030619 [exp]	13.4	0.7931
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	15.0	0.8078
AT1G54385			ARM repeat superfamily protein...		Lus10002627 [exp]	16.2	0.8071

Compare expression of checked genes

Lus10023586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.