Plant FIBer expression Database

Lus10023589 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12130 52 / 4e-08 ATTERC, PDE149 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014022
[exp]
0 / 1 AT5G12130 402 / 7e-137 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1)
Lus10019895
[exp]
0 / 1 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G133900
[exp]
61 / 2e-11 AT5G12130 472 / 5e-167 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1)
PFAM info
Representative CDS sequence
>Lus10023589 pacid=23148278 polypeptide=Lus10023589 locus=Lus10023589.g ID=Lus10023589.BGIv1.0 annot-version=v1.0
ATGACAACAACCGTTGACAGCTCCCTGATCGAAGCCAACATTAGCGACGCTATCGAGGACACCAAACAACCGGAGGGCGAATCCGAGGCCGAGCTGAGCC
TGGCAGTTGACCTAAACAAGAAGCCGACAAAATCACCAAAGAAGACGACCATCGTCGATGTGCTAGTGGTACAGGTAAGCGGGTCTGAGGTCGTTTTTCA
CGCTCATCTCCCAGAGTATGTCAGAGTTGGAGTATTTCCGTCGATTGCTATCGTCCTAGGCTTCATTGGATGCAAGATGATACTGGATTTCTTCGGTGAG
TTATCGTCTAATCCATCACTGTCTATCATTCTATCCTATGCTTCAAACTTCCGTTCTCGGGTAATAGTTTTTGAGAGAGTCCTCGAAACTTCATCTTCAG
GTTTTCACGTATCAACCGAGGCATCTCTTGGGTTTGTGGAAACAAGCCTAAGCATATGCGTGATATTTAGCCCCTTGAAGAAATCTGTGTCCGACGAATG
A
AA sequence
>Lus10023589 pacid=23148278 polypeptide=Lus10023589 locus=Lus10023589.g ID=Lus10023589.BGIv1.0 annot-version=v1.0
MTTTVDSSLIEANISDAIEDTKQPEGESEAELSLAVDLNKKPTKSPKKTTIVDVLVVQVSGSEVVFHAHLPEYVRVGVFPSIAIVLGFIGCKMILDFFGE
LSSNPSLSIILSYASNFRSRVIVFERVLETSSSGFHVSTEASLGFVETSLSICVIFSPLKKSVSDE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10023589
[exp]
0 1
AT5G22450 unknown protein Lus10000530
[exp]
2.4 1.0000
AT4G17220 ATMAP70-5 microtubule-associated protein... Lus10003908
[exp]
3.5 1.0000
AT2G20420 ATP citrate lyase (ACL) family... Lus10022902
[exp]
5.2 1.0000
AT3G02100 UDP-Glycosyltransferase superf... Lus10015750
[exp]
5.3 1.0000
AT4G13090 XTH2 xyloglucan endotransglucosylas... Lus10032879
[exp]
5.9 1.0000
Lus10007184
[exp]
6.5 1.0000
Lus10007226
[exp]
7.0 1.0000
AT2G28605 Photosystem II reaction center... Lus10009159
[exp]
7.5 1.0000
AT4G05120 FUR1, ENT3, FLU... FUDR RESISTANT 1, EQUILIBRATIV... Lus10018414
[exp]
7.9 1.0000
Lus10034743
[exp]
8.4 1.0000

Lus10023589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.