Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47630 237 / 4e-77 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023597 [exp] 286 / 4e-96 AT3G47630 473 / 6e-169 unknown protein Lus10024227 [exp] 286 / 1e-95 AT3G47630 474 / 5e-169 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G076200 [exp] 242 / 7e-79 AT3G47630 472 / 1e-168 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF09139 [flax] [poplar] Tam41_Mmp37 Phosphatidate cytidylyltransferase, mitochondrial
Representative CDS sequence Show only first row Show all	>Lus10023590 pacid=23148341 polypeptide=Lus10023590 locus=Lus10023590.g ID=Lus10023590.BGIv1.0 annot-version=v1.0 ATGTCGGTTTGGCATTGGCGTTCATGGCTGCTTGATAGTGATGTTGGCAACCTACGAGAGGCGAGGAGTCCTAAAAATAGGGAGAGAAAAATCCCTAGAG TTGGGAGAGACAAATACAGAACTTTTAAACCTACAAATAGTAAGTTAAAGAAATTTACTGTGTCGTCAATGGTAGATTATATCCTTGGTGTGGCAGATCC TCTCAAATGGCATTCAGAGATGAACCATAAACTTCATACAGATCATTATGCCTCATGGATGTTTCATCTCGGGGGAGCAAAACTGATCACTAAAGTTGCA GATGACATTGGCATTGCTATGCACTTCAATCCCTTTGTTACTTGGAACGACAAGATGGTAAAATATGGGGTTGTTAGAATGCATGACTTGCTTCAAGACA TCCTAAACTGGCAAAGATTTTACATAAGTGGTCGGTTGCAAAAACCTGTTCATGTACTTGTGGACAATTTGGATGTTGAGAAGTTAAATGCTGTGAACTT GAGGGCCGCTATTACTGCTGCTCTCCTCATTTTGCCATCCAAGTTTACTGAGGTGTTCTACTGCGTCATGTTTAAGAAGATCTCTATGCTAAGATATGGT GACTTGCGGATGCTTTTCGCAGAGGACAAGAAGAAGGTTCATAATAAGAGTCTCTACAAAGAGAGCGTTTTACTTGTCTATAACTGCCTACTTGTTAGTT TTACATTCAAAGGATCTATCTTTAGTTCTGTTATACGGGAAGTCGTGTTCAGCTCGAGAGAAGAGGCTGCTAGAAGCATGCAGAAGGTGTTGAGACTTAC AGTAATGGTTTCGAGCTTAAGGCAGGCAGTCTAG
AA sequence Show only first row Show all	>Lus10023590 pacid=23148341 polypeptide=Lus10023590 locus=Lus10023590.g ID=Lus10023590.BGIv1.0 annot-version=v1.0 MSVWHWRSWLLDSDVGNLREARSPKNRERKIPRVGRDKYRTFKPTNSKLKKFTVSSMVDYILGVADPLKWHSEMNHKLHTDHYASWMFHLGGAKLITKVA DDIGIAMHFNPFVTWNDKMVKYGVVRMHDLLQDILNWQRFYISGRLQKPVHVLVDNLDVEKLNAVNLRAAITAALLILPSKFTEVFYCVMFKKISMLRYG DLRMLFAEDKKKVHNKSLYKESVLLVYNCLLVSFTFKGSIFSSVIREVVFSSREEAARSMQKVLRLTVMVSSLRQAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47630			unknown protein		Lus10023590 [exp]	0	1
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	1.7	0.8756
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	7.9	0.8381
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	8.7	0.8340
AT4G23660		ATPPT1	polyprenyltransferase 1 (.1.2....		Lus10033224 [exp]	11.7	0.8336
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	13.0	0.8248
AT1G20670			DNA-binding bromodomain-contai...		Lus10001391 [exp]	13.1	0.8430
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	19.8	0.8020
AT4G00440			Protein of unknown function (D...		Lus10017797 [exp]	23.8	0.8025
AT5G05310			TLC ATP/ADP transporter (.1.2....		Lus10012891 [exp]	25.7	0.8202
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026892 [exp]	29.0	0.7920

Compare expression of checked genes

Lus10023590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.