Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26660 52 / 6e-09 AS2 LBD24 LOB domain-containing protein 24 (.1) AT3G26620 51 / 8e-09 AS2 LBD23 LOB domain-containing protein 23 (.1) AT5G63090 44 / 9e-06 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G27650 42 / 3e-05 AS2 LBD25 LOB domain-containing protein 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011906 [exp] 56 / 3e-10 AT5G63090 59 / 4e-11 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10009567 [exp] 50 / 3e-08 AT3G26660 61 / 5e-13 LOB domain-containing protein 24 (.1) Lus10039940 [exp] 45 / 7e-06 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10027676 [exp] 42 / 4e-05 AT5G63090 233 / 8e-79 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10016769 [exp] 40 / 0.0004 AT5G66870 222 / 3e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1) Lus10022463 [exp] 40 / 0.0005 AT5G66870 221 / 8e-71 LATERAL ORGAN BOUNDARIES DOMAIN GENE 36, ASYMMETRIC LEAVES 2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G082200 [exp] 44 / 1e-05 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.015G135900 [exp] 41 / 8e-05 AT3G26660 165 / 2e-53 LOB domain-containing protein 24 (.1) Potri.012G083500 [exp] 40 / 0.0001 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10023591 pacid=23148261 polypeptide=Lus10023591 locus=Lus10023591.g ID=Lus10023591.BGIv1.0 annot-version=v1.0 ATGGCTCATCAAGGTGCTCAACGATGTCAAAAATGCAAATACAGCAGGAAAGCCGAGTGTCCCGATGGATGCCCGTTCAGGGATTTCTTTCCGCCCGAGG GAGACAATTTTCAACAAGTCATCGGTTTATACGGAAAGGGGACAAGCAGTGCTCTTAGTCACCAGATGGACCAACTCCCACCCACTTTGTTTCCTAATTT CCATAATAACGCATACTTCAATTCCCTCACCGTGGATGGGGGGCTCCGAAGAGATAATAGGGTGGTTGGATCGTCCGGAAACATCCAAGTTCTTGAAATG GAGAGACATCATCTCAAGCAGGGGCAACAGTATTTCCAGAATGAAGCAAACTTAGCACATGCTCAGAATGCTATTTTGAGCGCCGCTAATGAGGAGCTCG TCTATGAAAACAACTGGTTTAGGAACCAGCATCCCGACGAGAATCCTCCTCCCTTCCACGACCCCGGCAACCAATAG
AA sequence Show only first row Show all	>Lus10023591 pacid=23148261 polypeptide=Lus10023591 locus=Lus10023591.g ID=Lus10023591.BGIv1.0 annot-version=v1.0 MAHQGAQRCQKCKYSRKAECPDGCPFRDFFPPEGDNFQQVIGLYGKGTSSALSHQMDQLPPTLFPNFHNNAYFNSLTVDGGLRRDNRVVGSSGNIQVLEM ERHHLKQGQQYFQNEANLAHAQNAILSAANEELVYENNWFRNQHPDENPPPFHDPGNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10023591 [exp]	0	1
AT1G05950			unknown protein		Lus10005129 [exp]	7.7	0.8805
AT3G29300			unknown protein		Lus10034904 [exp]	11.3	0.9092
AT5G59790			Domain of unknown function (DU...		Lus10005442 [exp]	16.6	0.9053
AT5G59790			Domain of unknown function (DU...		Lus10004943 [exp]	22.0	0.9037
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	24.5	0.8989
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	25.7	0.8959
AT4G36970			Remorin family protein (.1)		Lus10027302 [exp]	26.3	0.8787
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	28.2	0.8967
AT3G29300			unknown protein		Lus10023634 [exp]	30.3	0.8944
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	31.7	0.8953

Compare expression of checked genes

Lus10023591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.