Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74630 816 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 460 / 2e-154 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 442 / 6e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 437 / 1e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 439 / 3e-145 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 436 / 4e-144 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 435 / 5e-143 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 424 / 4e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04840 419 / 3e-138 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 419 / 6e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024222 [exp] 909 / 0 AT1G74630 719 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 478 / 2e-161 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 469 / 8e-158 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 455 / 2e-151 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 446 / 3e-149 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 446 / 4e-149 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 442 / 2e-147 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 441 / 1e-146 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 439 / 7e-145 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035900 [exp] 929 / 0 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 484 / 1e-163 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 465 / 3e-155 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 456 / 1e-151 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 455 / 2e-151 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 451 / 4e-151 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 452 / 1e-150 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 449 / 3e-150 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 450 / 5e-150 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 432 / 2e-143 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10023592 pacid=23148392 polypeptide=Lus10023592 locus=Lus10023592.g ID=Lus10023592.BGIv1.0 annot-version=v1.0 ATGAGGAAGAGCAGCGCAGCCAGAGAGATGAACTTCCTCTCTTCGTTGAGCCATTGCAAGACCTTAGCATCTGTCATGCAACTTCACGCCAATTTACTCA AGACTGGCTTTGCCGACGACCATTTCGCGGCCGGAAAGTTACTCCTCCACTGTACAACCGCTGTCTCCGACTCACTTGAGTACGCCTCGTCCCTACTACG CCACGCTCCAGATCCCGATGTCTTCATGTGCAATACAGTCATTCGTGGTCTGGCGGAGTCAGATAAGCCCGGAAATGCGATCTCTACCTTTGTTGAAATG CGGAGGAGGGATTTGGGGTTGCCACCCGATAGCTACTCGTTTGCTTTTGTTCTTAAAGCTTCCGCGAATTTAAAATCTTTCAGAGTTGGGTCTCAGTTGC ATTGCCAAGCTTTGATTTATGGGCTGGATAGACATCTCTTTGTTGGAACTACTTTGATTAGTTTGTACGGAGAGTGCGCGTGTGTAGGTTCTGCACGGAA GATGTTCGACGAATTGCGTGAACCAAATATTGTTGCCCGGAACGCTCTTCTCACTGCCTACTTAAGGGGAGAGGATGTGAAGTGTGCAATGGAATTGTTT GATCTGATTCCGTTCAAGAACTTGATATCTTGGAACGTGATGCTCGCTGGATGCATGAAATCAGGCGAGCTGGAGATAGCGAGGAAGCTGTTTTCTCAAA TGGCCAAGAAGGATGATGTCTCCTGGAGTACAATGATTGTTGGGCTTTCCCAAAAGGGGTATTTCCGCGAGGTTTTTGGATATTTCAGGGAGTTGCGGAG AGAGGGGATTGCACTGAATGAGGTGAGCTTGACAGGAGTGCTCTCAGCGTGTGCCCAAGCTGGGGCGTTCGAGTTTGGCAAAATCTTACACGGATTGCTA GAGAAAGCTGGCTTCTTCTGGATGGTTTCTGTTAACAATGCTTTACTGGATACTTATGCTAAGTGTGGAGACGTTGCAATGGCTAGGCTTGTGTTTGAAC GAATGCCTCGGCAAAGAACCATAGTTTCTTGGACGTCAATGCTGGCAGGACTTGCAATGCATGGACATGGAGATGAAGCAATTGAGCTTTTTCGTGAAAT GGAATCGTCTGATATTATGCCTGATGGAATCACCTTTATTTCTCTTTTGTATGCTTGTAGTCACAGTGGATTCGTTGAACAAGGATGGACCTATTTTTGT GACATGAAGAACCTGTACAGCATTGAGCCAGCTATTGAACACTATGGCTGTATGGTTGATATATATGGCCGAGCTGGCCAGCTGCAGAAGGCCTATCAAT TTGCCTGTCAGATGCCAATTCCACCGAATGCAATTATCTGGCGGACTCTTCTTGGTGCTTGCAGTTTTCACGGCGATGTGAAGTTGGCGGAACAAGTGAA GCTGAAGCTTTCTGAGCTAGACCCCAAGGACTCTGGTGACCATATTCTGCTTTCAAATATCTACGCTGTTGCAGGAAAGTGGAAAGACGTTGCTACTGTG CGAAGATCAATGAATGAACTGAAAATCCAGAAAATTCCTGGGTGGAGCATGATTGAGGTGGATAAGATCATGTATACTTTCATGGCAGGTGTGAAACAGG ATAAGATCATAGGAGAAGCTTATGAGAAGCTAAAGGAGATAATGTTGAGGCTTCGGTTGGAACGAGGGTATGCTCCTGAAGTGGGTAACGTCTTGTATGA CATAGAAGATGAGGAAAAAGAAGACTCCATATCCAATCACAGCGAAAAGCTTGCTGTGGCTTTTGGGATTGGTAGATTGTGCACGGGGAAAATGATAAGA ATAGTAAAGAATTTGAGGATCTGCAGGGACTGTCATGTGTTGATGAAGCTAATTTCTGAGGTTTATGATGTTGAGATTGTGGTAAGAGATAGAAGTCGCT TTCACACTTTCAAGGATGGCTATTGTTCATGCAGAGACTACTGGTAA
AA sequence Show only first row Show all	>Lus10023592 pacid=23148392 polypeptide=Lus10023592 locus=Lus10023592.g ID=Lus10023592.BGIv1.0 annot-version=v1.0 MRKSSAAREMNFLSSLSHCKTLASVMQLHANLLKTGFADDHFAAGKLLLHCTTAVSDSLEYASSLLRHAPDPDVFMCNTVIRGLAESDKPGNAISTFVEM RRRDLGLPPDSYSFAFVLKASANLKSFRVGSQLHCQALIYGLDRHLFVGTTLISLYGECACVGSARKMFDELREPNIVARNALLTAYLRGEDVKCAMELF DLIPFKNLISWNVMLAGCMKSGELEIARKLFSQMAKKDDVSWSTMIVGLSQKGYFREVFGYFRELRREGIALNEVSLTGVLSACAQAGAFEFGKILHGLL EKAGFFWMVSVNNALLDTYAKCGDVAMARLVFERMPRQRTIVSWTSMLAGLAMHGHGDEAIELFREMESSDIMPDGITFISLLYACSHSGFVEQGWTYFC DMKNLYSIEPAIEHYGCMVDIYGRAGQLQKAYQFACQMPIPPNAIIWRTLLGACSFHGDVKLAEQVKLKLSELDPKDSGDHILLSNIYAVAGKWKDVATV RRSMNELKIQKIPGWSMIEVDKIMYTFMAGVKQDKIIGEAYEKLKEIMLRLRLERGYAPEVGNVLYDIEDEEKEDSISNHSEKLAVAFGIGRLCTGKMIR IVKNLRICRDCHVLMKLISEVYDVEIVVRDRSRFHTFKDGYCSCRDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74630			Tetratricopeptide repeat (TPR)...		Lus10023592 [exp]	0	1
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10037229 [exp]	1.7	0.8872
AT2G37310			Pentatricopeptide repeat (PPR)...		Lus10025273 [exp]	2.0	0.9056
AT1G43980			Tetratricopeptide repeat (TPR)...		Lus10028647 [exp]	2.2	0.8766
AT3G29230			Tetratricopeptide repeat (TPR)...		Lus10030932 [exp]	2.8	0.8986
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10005207 [exp]	3.5	0.8562
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	5.5	0.8689
AT1G66345			Pentatricopeptide repeat (PPR)...		Lus10002294 [exp]	6.3	0.8494
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	9.4	0.8657
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10002599 [exp]	9.5	0.8685
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	11.7	0.8823

Compare expression of checked genes

Lus10023592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.