Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34860 123 / 2e-35 EDA3 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024221 [exp] 217 / 2e-72 AT2G34860 171 / 2e-54 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009800 [exp] 154 / 1e-47 AT2G34860 201 / 6e-66 embryo sac development arrest 3, DnaJ/Hsp40 cysteine-rich domain superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023593 pacid=23148319 polypeptide=Lus10023593 locus=Lus10023593.g ID=Lus10023593.BGIv1.0 annot-version=v1.0 ATGGCATCGTTATCATCCTCATTGTTCGTTGCTTCTCAGCTTTCTCTCGTCCCACAGCGGGTCACTTTTTCATCTCCCAACTCCCGCCTAGCAATCGACT CAAAGTCGGTAGGGTTTCGGGTTAGAGCAACACTGGAGAATGGTGACAGCACTTCTGGAGGTTCGGACTCTTCAAGCCCTACAAAGGAATCTCAAACATC AACATCAAGACGTAGGTGTCTTGTGTGCATATGTTCAACTATGGCTTTGATTGGTAATTCATCAATTTCTCCTTCTATTCCAAGAGCAAATGCGTCAGAT GGAAAACCAAACCCTGGCTGCCGTAATTGTGGGGGCTCCGGTGCTGTTCTTTGTGACATGTGTGGTGGAACAGGAAAATGGAAAGCCCTCAACAGGAAAC GTGCTAAAGATGTCTATGAGTTCACTGAATGTCCTAATTGTTATGACTCTGAAGCCAGCAACATGGCAACATTATTTTGCCCACGAGAGTACATCTATAC AGTTGCAAGCAACAGTGAGTACATAGAGGACGTGACTCAGCATCGTAGGATACTGAAACGGGATGTTTATGGGAAAATGCCACCGGAAGGTTCTTAA
AA sequence Show only first row Show all	>Lus10023593 pacid=23148319 polypeptide=Lus10023593 locus=Lus10023593.g ID=Lus10023593.BGIv1.0 annot-version=v1.0 MASLSSSLFVASQLSLVPQRVTFSSPNSRLAIDSKSVGFRVRATLENGDSTSGGSDSSSPTKESQTSTSRRRCLVCICSTMALIGNSSISPSIPRANASD GKPNPGCRNCGGSGAVLCDMCGGTGKWKALNRKRAKDVYEFTECPNCYDSEASNMATLFCPREYIYTVASNSEYIEDVTQHRRILKRDVYGKMPPEGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34860		EDA3	embryo sac development arrest ...		Lus10023593 [exp]	0	1
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	1.4	0.9635
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031869 [exp]	2.0	0.9525
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10040768 [exp]	2.8	0.9557
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10019395 [exp]	3.5	0.9551
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10020698 [exp]	3.5	0.9498
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	4.5	0.9517
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10021986 [exp]	5.9	0.9443
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10004200 [exp]	6.7	0.9388
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10021576 [exp]	7.1	0.9366
					Lus10030090 [exp]	7.5	0.9397

Compare expression of checked genes

Lus10023593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.