Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62440 71 / 2e-14 Protein of unknown function (DUF3223) (.1) AT1G45230 44 / 8e-05 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT2G40030 43 / 0.0004 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002053 [exp] 418 / 9e-146 AT5G62440 98 / 2e-23 Protein of unknown function (DUF3223) (.1) Lus10011903 [exp] 215 / 7e-66 AT5G62440 96 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10009570 [exp] 212 / 1e-64 AT5G62440 88 / 7e-20 Protein of unknown function (DUF3223) (.1) Lus10024794 [exp] 203 / 3e-62 AT5G62440 95 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10024968 [exp] 194 / 3e-58 AT5G62440 90 / 1e-20 Protein of unknown function (DUF3223) (.1) Lus10024824 [exp] 171 / 2e-50 AT5G62440 84 / 8e-19 Protein of unknown function (DUF3223) (.1) Lus10022837 [exp] 147 / 2e-40 AT5G62440 86 / 4e-19 Protein of unknown function (DUF3223) (.1) Lus10021669 [exp] 74 / 1e-15 AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1) Lus10035009 [exp] 73 / 6e-15 AT5G62440 179 / 5e-57 Protein of unknown function (DUF3223) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033100 [exp] 64 / 1e-11 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 57 / 1e-09 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 52 / 6e-08 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1) Potri.001G111300 [exp] 41 / 0.0008 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Lus10023594 pacid=23148326 polypeptide=Lus10023594 locus=Lus10023594.g ID=Lus10023594.BGIv1.0 annot-version=v1.0 ATGCCTGTAAGAAGAAATAGAAGGGGAAACTGGAAATGGGAAGTCTGCGGAGAAGGAGAAACTGGTATATTTCCAGAATCCCGGGTTATACCTGACTCCC CGTCGATGGATTTACCATTTCAACCAGTTGCTTGGCACGGGCCTTGTCAATATCCCTATCCCGCTTGTAAGTATTCTGTTCCATGTTGGATTGTTGTCCA ATCACTTGATCACAGAGGAAAAGAGCTGTTGGAGTTGGTGGAGAGGGGTCACCCGGAGCCGGAAAAATTTATTGGTTGCGGGGTTGAATATTTTCAAGTC CAAACATACAAAATGTGCGATCGTCGCCTCACCTTTGTTGCCGTAAGGAAAGATGGTTCTATGGCCAAGTTCTGCTACAGGAGCTGTATTAACAATATCA CTCCCTTTCCCGAGGATGCGAAAGATCTCGGTGGTGGTGTTGCTGCTGTTTGTTTATGTCATTTGGGTGGCCCAAGTGGTTTGTGGCCCGATCATAAATT TGGAGCAATACGTTGTTCTGACGAGAATGAGGAGGTGGAGGGCATTGTCACCTTGGGTCCGGCCAAATTCCGGCCTCCCACTAACCTTAATATGTTTCAA TGTTTCAACATGTTGCTTCTCACCTCGCCACTAAATAAGGCATTCAGTGAGAGGTACCATTTGATGTTACTGGATTTGCTGAAAAAGGGTGATCTAGAGT GGGAGAAAAAGATTGGTTCCGGGGTTGAATCATTTCAAGTTCGAATCCATCCAATGTACGACAGCAGGCTGAGAAGCTTCTTCCTTGTTAGGGGAGATGG TTCCGTGGAGGATTTCTGCTATATGAACTGTGTGAACAACATAGTTCCTATGCCGGAGGAATTCATAGAAAAGTTTAATGGTCCTTGTACTTGTCATCAT CAACAAGACGGCGAAGGTGGTGTCATCACCTTGGGTATGCATTAG
AA sequence Show only first row Show all	>Lus10023594 pacid=23148326 polypeptide=Lus10023594 locus=Lus10023594.g ID=Lus10023594.BGIv1.0 annot-version=v1.0 MPVRRNRRGNWKWEVCGEGETGIFPESRVIPDSPSMDLPFQPVAWHGPCQYPYPACKYSVPCWIVVQSLDHRGKELLELVERGHPEPEKFIGCGVEYFQV QTYKMCDRRLTFVAVRKDGSMAKFCYRSCINNITPFPEDAKDLGGGVAAVCLCHLGGPSGLWPDHKFGAIRCSDENEEVEGIVTLGPAKFRPPTNLNMFQ CFNMLLLTSPLNKAFSERYHLMLLDLLKKGDLEWEKKIGSGVESFQVRIHPMYDSRLRSFFLVRGDGSVEDFCYMNCVNNIVPMPEEFIEKFNGPCTCHH QQDGEGGVITLGMH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62440			Protein of unknown function (D...		Lus10023594 [exp]	0	1
AT5G07370		ATIPK2A, IPK2a	inositol polyphosphate kinase ...		Lus10009397 [exp]	1.4	0.8762
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10042439 [exp]	2.0	0.8512
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	2.2	0.8868
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10000007 [exp]	2.4	0.8386
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10037758 [exp]	2.6	0.8248
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10000032 [exp]	3.5	0.8558
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10036330 [exp]	8.5	0.8117
AT3G14240			Subtilase family protein (.1)		Lus10034517 [exp]	10.5	0.8452
AT4G10620			P-loop containing nucleoside t...		Lus10035986 [exp]	12.5	0.7937
AT5G22280			unknown protein		Lus10034182 [exp]	12.6	0.7801

Compare expression of checked genes

Lus10023594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.