Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023595 pacid=23148311 polypeptide=Lus10023595 locus=Lus10023595.g ID=Lus10023595.BGIv1.0 annot-version=v1.0 ATGTCGAGCCAACCATCTAGATCATTCACTATTGTGGCTCTAGCTCTTCACCCTTTTCTTGAGCTATTTGAAAAGATATTGGAGTGCCTGAAATTGGAAG GGGAAGCGCAGGAGAAAGCAGTAGAGGTAGTAGAAGAGAAGTTGAAGGTGCTTGAAGCAGGACTCCAAGGAGATATATTTGGAGGAGGGGAGATCGGTAC AGTTTCTGCAGGGATCAACTACAGCAGGGAGAGCATAGGATTGTTGGAGATTGTGATGTGTTCGTGTTTCGGACAGTACGATCTGCAAGAGGAAGAGATT GGGATGAAGATCATGGACCCTGTTTTGTGGTTTCTATCGTTTGCAGTAAAAAAATATCATCTTAAGTTTGTGGGAGACTGCGACGGCTACGACCTCGGCC TCCTCCTTTTGTTCCTCTAA
AA sequence Show only first row Show all	>Lus10023595 pacid=23148311 polypeptide=Lus10023595 locus=Lus10023595.g ID=Lus10023595.BGIv1.0 annot-version=v1.0 MSSQPSRSFTIVALALHPFLELFEKILECLKLEGEAQEKAVEVVEEKLKVLEAGLQGDIFGGGEIGTVSAGINYSRESIGLLEIVMCSCFGQYDLQEEEI GMKIMDPVLWFLSFAVKKYHLKFVGDCDGYDLGLLLLFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Lus10023595 [exp]	0	1
					Lus10028109 [exp]	4.0	0.7891
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10027396 [exp]	4.2	0.7729
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10026372 [exp]	5.9	0.7363
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10020636 [exp]	8.0	0.7157
AT1G30190			unknown protein		Lus10038508 [exp]	8.6	0.6621
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10002934 [exp]	9.7	0.7601
					Lus10039764 [exp]	11.0	0.7659
AT5G48540			receptor-like protein kinase-r...		Lus10006752 [exp]	13.2	0.7597
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10005190 [exp]	16.9	0.7208
					Lus10013650 [exp]	17.4	0.7344

Compare expression of checked genes

Lus10023595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.