Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47610 415 / 2e-143 transcription regulators;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024226 [exp] 657 / 0 AT3G47610 421 / 5e-146 transcription regulators;zinc ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068900 [exp] 422 / 3e-146 AT3G47610 408 / 3e-141 transcription regulators;zinc ion binding (.1) Potri.003G168100 [exp] 218 / 6e-69 AT3G47610 238 / 2e-77 transcription regulators;zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06221 [flax] [poplar] zf-C2HC5 Putative zinc finger motif, C2HC5-type
Representative CDS sequence Show only first row Show all	>Lus10023596 pacid=23148334 polypeptide=Lus10023596 locus=Lus10023596.g ID=Lus10023596.BGIv1.0 annot-version=v1.0 ATGGAATCGGCGGGACAGTGGCTGGAGAAAGCGCTCGTAGATTTGTGCCAGAGAGTTGAGATCGGTTTGGATTTGGACAGAGACGTCATCTCCGGCTTGG TCTCCTATTGCGAACTCGCCCAACCTATTGACGCCAAAGAATATCTCGATGTAATCCACTCCTCTCCATTGTTTGCTTCTAATTGCAGTAGATTCTTTCA CCTCCAGTCTTCCATTATGTTCCTTCCTCTGAATATAGTCGGGCAGGAGGCTGGAAAGAATGTGATTGGTGAATATTTGCGGCGTAGAGGTTATGTGGAT TCTGCCACCAGCAGTTCAATTCCTCAACCTTCAGAATTCCATACCTATGTGAAGCCAGCAACAGAGAAGGGGCCTGTAACTGGAGCCAAGAAACCATCGA ATGCTTCTAAAACGACTACTGGATCTGGTCATCAGGCTGAACCAAACAAAAAGAATTCTGCTTCGAATAGTATCCATGATGAGGCCAGAATATCGAACCA AATTGGCGGGCAAGGTAATTCTAGGAAGAAGAAGAAAAGTGGGAAGGTCATATCACTTGAAGAGGCTGCGAAAGGGTCGATTGTGTTCCAACAGGGTAAG CCATGTTCTTGTCAAGCACGTAGGCACAGACTAGTGAGCAATTGTTTGTCTTGTGGCAAGATAGTTTGTGAACAAGAAGGAGAAGGACCATGCTTGTTTT GCGGTGCTCTTGTTCTTAAGGAAGGGAGTTCATATGCTGGCCTAGAGGGAATATCTGCTCCAGTGTCTGATGCCGAAGCAGCAGCTGAAGCATACGCAAA AAGGCTTGTGGATTATGACAGAGATGCTGCTTCACGTACCACTGTCATTGATGATCAAAGTGATTACTATGAGATTGAAGGAAATAGCTGGCTTTCTAAG GAGGAAAAGGAACTTTTAACAAAGAAACAAGAGGAGATAGAAGCAGCAGAAAAAGCCAAGAGAAACAAAGTGATTATCACGTTTGATTTGGTTGGGCGCA AGGTTCTGGTGAATGAGGATGAAGTTCGAGAGCTGGAATCAGAGAACAGAATACTGAGACCGTCAGCTGGAAAAGAAAAAGAAGTGAACCGTATTAAACC AAACCCAAGCCTTAAAATACAACCAATCTTCATGGACCCAGGCCCCAGTCAAAAGTCTGCCAAGCAACAGAGTAAAAGAAATGGCGGTGCTGGTATATGC TTAGCTATCACTGGCAGAGTGCAGCATGACAACAAAGACATGAAGAAGTTGTTAATGGAAGACGAACAGATGGAAACAGGAGCTTCGAATGTAAAACACT AG
AA sequence Show only first row Show all	>Lus10023596 pacid=23148334 polypeptide=Lus10023596 locus=Lus10023596.g ID=Lus10023596.BGIv1.0 annot-version=v1.0 MESAGQWLEKALVDLCQRVEIGLDLDRDVISGLVSYCELAQPIDAKEYLDVIHSSPLFASNCSRFFHLQSSIMFLPLNIVGQEAGKNVIGEYLRRRGYVD SATSSSIPQPSEFHTYVKPATEKGPVTGAKKPSNASKTTTGSGHQAEPNKKNSASNSIHDEARISNQIGGQGNSRKKKKSGKVISLEEAAKGSIVFQQGK PCSCQARRHRLVSNCLSCGKIVCEQEGEGPCLFCGALVLKEGSSYAGLEGISAPVSDAEAAAEAYAKRLVDYDRDAASRTTVIDDQSDYYEIEGNSWLSK EEKELLTKKQEEIEAAEKAKRNKVIITFDLVGRKVLVNEDEVRELESENRILRPSAGKEKEVNRIKPNPSLKIQPIFMDPGPSQKSAKQQSKRNGGAGIC LAITGRVQHDNKDMKKLLMEDEQMETGASNVKH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47610			transcription regulators;zinc ...		Lus10023596 [exp]	0	1
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10021767 [exp]	2.4	0.9076
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	4.7	0.9094
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	10.7	0.9028
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10034705 [exp]	12.5	0.9003
AT3G50000		ATCKA2, CKA2	"casein kinase II, alpha chain...		Lus10011534 [exp]	12.6	0.8841
AT2G26210			Ankyrin repeat family protein ...		Lus10033419 [exp]	13.8	0.8710
AT2G28370			Uncharacterised protein family...		Lus10021469 [exp]	14.6	0.8308
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	15.7	0.8956
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10022726 [exp]	18.0	0.8997
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10015686 [exp]	22.0	0.8835

Compare expression of checked genes

Lus10023596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.