Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47630 458 / 5e-163 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024227 [exp] 606 / 0 AT3G47630 474 / 5e-169 unknown protein Lus10023590 [exp] 275 / 6e-92 AT3G47630 240 / 2e-78 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G076200 [exp] 472 / 1e-168 AT3G47630 472 / 1e-168 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0260 [flax] [poplar] NTP_transf PF09139 [flax] [poplar] Tam41_Mmp37 Phosphatidate cytidylyltransferase, mitochondrial
Representative CDS sequence Show only first row Show all	>Lus10023597 pacid=23148265 polypeptide=Lus10023597 locus=Lus10023597.g ID=Lus10023597.BGIv1.0 annot-version=v1.0 ATGGAGAGATGTGAAAAGTCTAAGTTTGCTGATTTTCTGACAACTTTACCCGAAATAGAGTTTTGTTGTGTCTATGGATCATCACTCCATCCAAATAACT CTGACAAGTCGTCAATGGTAGATTATATCCTTGGTGTGGCAGATCCTCTCAAATGGCATTCAGAGAATCTGAAATTGAATAGAGATCATTATGCCTCATG GATGCTTCATCTCGGGGGAGCAAAACTGATCACCGAAGTTGCAGATGACATTGGTGTTGGTGTGCACTTCAATCCCTTTGTTACTTGGAACGGAAAGATG GTAAAATATGGGGTTGTTAGAATGCATGACTTGCTTCAAGACATCCTAAACTGGCAAAGATTTTACATAAGTGGTCGGTTGCAAAAACCCGTTCATGTAC TTGTGGACAATTTAGATGTTGAGAAGTTAAATGCTGTGAACTTGAGGGCTGCTATTGCTGCTGCTCTCCTCATTTTGCCATCCAAGTTCAGTGAGGAAGA TCTCTATGCTAAGATATGTAGCCTATCATACATGGGTGACTTGCGGATGCTTTTCGCAGAGGATAAGAACAAGGTGCAGAAGATTGTACAAGGGCAATTC AGTTTGTTCCAGTCTATGTATAAGCCATTCATTGAAGAATACAAAGCTAAGGATATAATAAGAGTCTCTTCATCATATCTTTCTCAGGACTGTTGTCTGC CAGCTACGCGATCTCTCGTATGGTCTCTTCCTCCACTGGTGAGGGGGAAAATGGGCACGCAGCTTGGGGAGAAGAAGATACTGGGCAATTCTGGTCGAGT TATACGGGAAGTCGTGTTCAGCTCGAGAGAAGAGGCTGCTAGAAGCATGCAGAAGGTGTTGAGACGTACAGTAATGATTTCGAGCTTAAGGCAGGCAGTC TCGGGGGTCCTGGCTGCTGGAGGGATGAATGCTGGTAGATACCTTGCTAATAAAATGTGCAAGGCTTGGAAATCTTTATCTGCCTCTGCCTCTTGA
AA sequence Show only first row Show all	>Lus10023597 pacid=23148265 polypeptide=Lus10023597 locus=Lus10023597.g ID=Lus10023597.BGIv1.0 annot-version=v1.0 MERCEKSKFADFLTTLPEIEFCCVYGSSLHPNNSDKSSMVDYILGVADPLKWHSENLKLNRDHYASWMLHLGGAKLITEVADDIGVGVHFNPFVTWNGKM VKYGVVRMHDLLQDILNWQRFYISGRLQKPVHVLVDNLDVEKLNAVNLRAAIAAALLILPSKFSEEDLYAKICSLSYMGDLRMLFAEDKNKVQKIVQGQF SLFQSMYKPFIEEYKAKDIIRVSSSYLSQDCCLPATRSLVWSLPPLVRGKMGTQLGEKKILGNSGRVIREVVFSSREEAARSMQKVLRRTVMISSLRQAV SGVLAAGGMNAGRYLANKMCKAWKSLSASAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47630			unknown protein		Lus10023597 [exp]	0	1
AT4G31460			Ribosomal L28 family (.1)		Lus10013249 [exp]	2.0	0.9168
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	2.4	0.9213
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	3.0	0.9130
AT4G10050			esterase/lipase/thioesterase f...		Lus10041054 [exp]	5.5	0.9045
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10014653 [exp]	6.3	0.9001
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	6.7	0.9058
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	7.5	0.9062
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	8.8	0.8938
AT3G47630			unknown protein		Lus10024227 [exp]	9.8	0.8703
AT5G50840			unknown protein		Lus10040383 [exp]	11.2	0.8850

Compare expression of checked genes

Lus10023597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.