Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18810 50 / 2e-06 phytochrome kinase substrate-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024228 [exp] 584 / 0 AT2G02950 107 / 2e-25 phytochrome kinase substrate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062600 [exp] 130 / 9e-34 AT1G18810 100 / 5e-23 phytochrome kinase substrate-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023598 pacid=23148383 polypeptide=Lus10023598 locus=Lus10023598.g ID=Lus10023598.BGIv1.0 annot-version=v1.0 ATGGATGACAACGAGGGCAAGATCATAACCGGTCTTCGCGATGCATCATTCTCCTGTTACCTCACCACACCAGCAGAAGTTAGCAGCTTTGCTGCTAAGC TAATCACTGAAACAGAAACCCATCACAGCAAACCTCCAGAGAGTGAACAAATTGGTGTCTTCAGAGCTGAGAAGTACTTCAACATGAGACTTGGAGATGC CAGAAGTCCTCGAATCATCGATACCATCACCGGAAAGTATGTAAAGGAGAGTGACGCTGTTGATGTCCGTAAGATGATCAGGAACAAGAGCAGCAGCCAG GTTGTCAGAATAAATATTCCAAGTGTGAGCTCTAGATCTGAAGCCAGCTGGAGCAGCCAATCTGCTTTGCTAAAAAGAAGCTCGCAGAAGAGCTTCTTCC ATGGATTCTCATGTAGAGGCTCATGCTCCGACAAGAAATCCATCCAAAACATCAACAGCAACAGCAGCCATGGAAGGAGAGATCATCTTGGTAGTAGGAA GCAGCAAGCTCTTGAAGTTGAAGTTGCTCACAATGCTGCCAAGTGGGAAGCAGCAAGAAAGGTGCAGTCTTCATCATCAAGATTCCAGAACCCAATTGGA ATACAAGGAAAGAAGGCATCTTTACAAGAAGAAGAAGGCAGGAAATCTCTGGATGTATTTGGGTCAAAGTCAATGAAGAAAGAAGACAACATAGCAGTGG ACTTGCAGAGGAAGTTGTCTGTGCTAACATGGGATGCAATTCCAAATCCAAACCAACAACCCAAAAAATCCACAAAGGCAGACAATTTCAGCCTGGATGA TGAGGTGGCAAGCGATGCAAGTTCGGATCTTTTCGAAATCGAAACGGCCTCAGGGAGCACCCGGGTGTTGACTAATTATAAGAAGACTACTTGTGAAGGT GGTTATGAGCCGAGCGAGGCAAGTGTGGAATGGAGTGTAGTCACTGCAAGTGCTGCTGCTGCACCTGAATTCTCGTTTGCTTCAGAGTGTGGTGATGATC ATAACATGTTGTCAAGAGCATCACAAGGAGCGAAAGGGAATTCTGCTGCAAAGGGTAAAAAGTATAATGGAATCCTGCTGAGTTGCAAAACCCTCAAGGC TGTTGATGTTGCTGAAACAGCACAACACAAGGGGAAACAGTTCTCTGGCATGCCAGCTTCCATGGATGTTCACAGAACGTGA
AA sequence Show only first row Show all	>Lus10023598 pacid=23148383 polypeptide=Lus10023598 locus=Lus10023598.g ID=Lus10023598.BGIv1.0 annot-version=v1.0 MDDNEGKIITGLRDASFSCYLTTPAEVSSFAAKLITETETHHSKPPESEQIGVFRAEKYFNMRLGDARSPRIIDTITGKYVKESDAVDVRKMIRNKSSSQ VVRINIPSVSSRSEASWSSQSALLKRSSQKSFFHGFSCRGSCSDKKSIQNINSNSSHGRRDHLGSRKQQALEVEVAHNAAKWEAARKVQSSSSRFQNPIG IQGKKASLQEEEGRKSLDVFGSKSMKKEDNIAVDLQRKLSVLTWDAIPNPNQQPKKSTKADNFSLDDEVASDASSDLFEIETASGSTRVLTNYKKTTCEG GYEPSEASVEWSVVTASAAAAPEFSFASECGDDHNMLSRASQGAKGNSAAKGKKYNGILLSCKTLKAVDVAETAQHKGKQFSGMPASMDVHRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10023598 [exp]	0	1
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10042692 [exp]	1.4	0.9385
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Lus10009799 [exp]	3.2	0.9425
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	6.6	0.8537
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10011682 [exp]	7.5	0.9072
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10014850 [exp]	7.7	0.8909
					Lus10007128 [exp]	8.5	0.8884
AT1G60060			Serine/threonine-protein kinas...		Lus10024800 [exp]	10.8	0.9144
AT5G49800			Polyketide cyclase/dehydrase a...		Lus10042398 [exp]	11.4	0.8746
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	11.7	0.9238
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10004684 [exp]	12.8	0.9010

Compare expression of checked genes

Lus10023598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.