Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18800 328 / 4e-114 NRP2 NAP1-related protein 2 (.1) AT1G74560 322 / 8e-112 NRP1 NAP1-related protein 1 (.1.2.3) AT2G19480 67 / 1e-12 NFA2, NFA02, NAP1;2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) AT3G13782 64 / 7e-12 NFA4, NFA04, NAP1;4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 4, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 04, nucleosome assembly protein1;4 (.1) AT4G26110 64 / 1e-11 NAP1;1, ATNAP1;1 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) AT5G56950 61 / 1e-10 NFA3, NFA03, NAP1;3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024229 [exp] 417 / 2e-149 AT1G18800 336 / 4e-117 NAP1-related protein 2 (.1) Lus10008620 [exp] 315 / 2e-109 AT1G18800 272 / 1e-92 NAP1-related protein 2 (.1) Lus10001231 [exp] 71 / 4e-14 AT5G56950 229 / 6e-73 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 03, nucleosome assembly protein 1;3 (.1) Lus10026197 [exp] 63 / 3e-11 AT4G26110 229 / 7e-73 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10011956 [exp] 62 / 1e-10 AT2G19480 422 / 8e-148 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10037630 [exp] 62 / 1e-10 AT2G19480 386 / 1e-133 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10027615 [exp] 61 / 1e-10 AT2G19480 385 / 3e-134 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Lus10042106 [exp] 61 / 1e-10 AT4G26110 242 / 1e-77 ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, nucleosome assembly protein1;1 (.1.2) Lus10011957 [exp] 61 / 1e-10 AT2G19480 449 / 2e-158 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062700 [exp] 359 / 3e-126 AT1G18800 324 / 2e-112 NAP1-related protein 2 (.1) Potri.012G069100 [exp] 351 / 5e-123 AT1G18800 325 / 7e-113 NAP1-related protein 2 (.1) Potri.017G080700 [exp] 319 / 1e-110 AT1G18800 292 / 4e-100 NAP1-related protein 2 (.1) Potri.004G128701 [exp] 266 / 3e-90 AT1G18800 244 / 1e-81 NAP1-related protein 2 (.1) Potri.006G148600 [exp] 72 / 2e-14 AT2G19480 447 / 1e-157 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.018G067800 [exp] 67 / 1e-12 AT2G19480 462 / 4e-163 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040250 [exp] 62 / 7e-11 AT2G19480 280 / 9e-87 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G040700 [exp] 61 / 1e-10 AT2G19480 287 / 7e-93 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G021400 [exp] 61 / 2e-10 AT2G19480 286 / 2e-94 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3) Potri.003G036500 [exp] 58 / 1e-09 AT2G19480 280 / 5e-90 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP A 02, nucleosome assembly protein 1;2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00956 [flax] [poplar] NAP Nucleosome assembly protein (NAP)
Representative CDS sequence Show only first row Show all	>Lus10023599 pacid=23148244 polypeptide=Lus10023599 locus=Lus10023599.g ID=Lus10023599.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGACAAGGGAAAGAAGATGAAAGTGGAGAAAGGCGAGGAGGAGAATCACCATATCGATGAAGAGCTTGTTCTCTCCATTGAGAAACTCC AGGAGATCCAGGACGAGCTCGAAAAGATCAATGAAGAGGCGAGTGATAAGGTGCTGGAAGTGGAACAGAAATATAATGTGGTACGCAAACCAGTTTATGA AAAGAGAAATGATATCATCAAATCCATTCCTGACTTCTGGTTGACCGCCTTTTTAAGCCATCCTGCACTGGGTAATCTTCTTAATGAAGAAGACCAAAAG GTATTTAAGCATCTAACTTCCTTGGAAGTGGAAGACTGTAAAGATGTGAAATCAGGCTACTCCATCACATTTAATTTTGAGGCCAATCCGTACTTTGAAG ATGCAAAGCTTACAAAGACATTCACCTTCCTAGATGAGGGGACAACTGAAATCTCTGCCACACCCATCAAGTGGAAAGAAGGCATGGCTCTGCCTAATGG AGTTAGCCATGAGAAGAAAGGCAACAAGAGGCCTTTGGCTGAGGACAGTTTCTTTAGCTGGTTCAGTAATACTCAACCGAAAGACATGATGGAAGAAATG CAAGATGAGATTGCAGAGATCATCAAGGAGGATTTATGGCCTAATCCTCTCGCCTACTTCAACAACGACCCGGATGAAGAGGATTTTGAAGGGGATGAAG GGGATAAGGAAGGTGACGATTCGGATGAAGATGATGACGAACAGGATGACGATGAAGATGACGGGGAAGATGAAGAAGGCGAAGAGGAGTAG
AA sequence Show only first row Show all	>Lus10023599 pacid=23148244 polypeptide=Lus10023599 locus=Lus10023599.g ID=Lus10023599.BGIv1.0 annot-version=v1.0 MAAADKGKKMKVEKGEEENHHIDEELVLSIEKLQEIQDELEKINEEASDKVLEVEQKYNVVRKPVYEKRNDIIKSIPDFWLTAFLSHPALGNLLNEEDQK VFKHLTSLEVEDCKDVKSGYSITFNFEANPYFEDAKLTKTFTFLDEGTTEISATPIKWKEGMALPNGVSHEKKGNKRPLAEDSFFSWFSNTQPKDMMEEM QDEIAEIIKEDLWPNPLAYFNNDPDEEDFEGDEGDKEGDDSDEDDDEQDDDEDDGEDEEGEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10023599 [exp]	0	1
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Lus10024229 [exp]	1.0	0.9518
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10012875 [exp]	2.8	0.8448
AT4G29390			Ribosomal protein S30 family p...		Lus10002508 [exp]	3.0	0.8432
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10038910 [exp]	4.9	0.8423
AT4G24830			arginosuccinate synthase famil...		Lus10033978 [exp]	5.5	0.8135
AT2G15910			CSL zinc finger domain-contain...		Lus10021009 [exp]	6.2	0.7658
AT1G71430			unknown protein		Lus10040114 [exp]	6.7	0.7965
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10038905 [exp]	8.8	0.7561
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10043405 [exp]	10.1	0.8072
AT1G74270			Ribosomal protein L35Ae family...		Lus10035539 [exp]	11.8	0.7878

Compare expression of checked genes

Lus10023599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.