Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11180 155 / 5e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 149 / 4e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 144 / 2e-40 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G08640 142 / 1e-39 ATFLS1, FLS flavonol synthase 1 (.1.2) AT3G21420 142 / 2e-39 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G63600 141 / 2e-39 ATFLS5, FLS5 flavonol synthase 5 (.1.2) AT5G63590 137 / 8e-38 ATFLS3, FLS3, FLS flavonol synthase 3 (.1) AT1G62380 135 / 5e-37 ATACO2, ACO2 ACC oxidase 2 (.1) AT1G77330 134 / 6e-37 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 135 / 8e-37 ATJRG21 jasmonate-regulated gene 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024230 [exp] 427 / 2e-151 AT3G19000 149 / 3e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10031150 [exp] 191 / 4e-59 AT4G10490 114 / 1e-29 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023600 [exp] 176 / 6e-55 AT2G30830 65 / 9e-13 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021002 [exp] 148 / 1e-41 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10006518 [exp] 147 / 4e-41 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024882 [exp] 143 / 5e-40 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10028678 [exp] 142 / 1e-39 AT1G77330 435 / 1e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000857 [exp] 140 / 7e-39 AT1G77330 440 / 2e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 140 / 8e-39 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069200 [exp] 380 / 1e-132 AT3G19000 147 / 2e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.016G117100 [exp] 151 / 6e-43 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 149 / 5e-42 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146100 [exp] 146 / 5e-41 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.006G101200 [exp] 145 / 2e-40 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G182700 [exp] 143 / 4e-40 AT1G77330 461 / 4e-165 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 143 / 1e-39 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146000 [exp] 142 / 3e-39 AT3G19000 357 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G145300 [exp] 139 / 2e-38 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G069300 [exp] 136 / 3e-37 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10023602 pacid=23148281 polypeptide=Lus10023602 locus=Lus10023602.g ID=Lus10023602.BGIv1.0 annot-version=v1.0 ATGACTCCTGAAATTGTTAGCATTCCTGTGGTGGATCTCTCACCTTTCTTCTCCGACGAGCCTTCCGACCAGCTGATATTGAAGAAGGAAAAGGTGCTGG AGATGGTGAAGAAAGCATGCTCCGAGTACGGATTCTTCCGGATAGTCAACCACGGGGTATCCACTGAACTCATGAAGCGTGCTCTCCAAGTTTCCAAGAC ATTCTTCGACCTCCCAGATGAGGAGAAGCGCAGGTACAGTCCTAGAAATGGAGCTCCGTTGCCAGCTGGATACACACGTCAACCCCTTCATTCTCCAGAC AAGAACGAGTTCTTTCTCGTCTACCCTCCCCAATCCCCCTTCAACGTCTACCCACCTCACCCACCCCAACTCAGGGAAGTGGCGGAGGAGGTGTTCTCGC AATTGAGGAAGATCGGATCATTGGTAGAAGGCATAATCAACGACTGCCTTGGTTTGCCTCGTGGGTTTTTACAACAGTTCAACAATGACAGGGCTTGGGA TTTCATGACCCAACTTCACTATTTCCCGGCGATTTCGGACGTCGAGAACAAAGGTAACTCACCACATCAGGACGCCAATTCCGTCACCGTTGTGTTCCAG GACGATACCGGAGGGCTAGAGGTCCTTAGAGGCAAGGACTGGATTCCGGTCCCTCCCTCTCCGGACTCCATGATCGTCAACATCGGAGATGTTCTCCAGG TGCTGAGCAACAACAAATTGAAAAGCGTGAGACACAGGGTGGTGAGCCCTAAAGAAAAGGACCGATATTCGTGCGCATTCTTCTACAACTTGGCCGTTGA CAAATTTGTGGAGCCATTGCCTCAGTTCACGTCGGATGTTGGGGAGCCGCCGCGTTATCGTAAGTATTTGCAAGGGGAGTACATGAAGCTGAGGCTTAAA TGCAAAACTCACCCACCTACGAGGCCTGAGGATGTCATCAACGTTACTCACTATGCTATCAACTAA
AA sequence Show only first row Show all	>Lus10023602 pacid=23148281 polypeptide=Lus10023602 locus=Lus10023602.g ID=Lus10023602.BGIv1.0 annot-version=v1.0 MTPEIVSIPVVDLSPFFSDEPSDQLILKKEKVLEMVKKACSEYGFFRIVNHGVSTELMKRALQVSKTFFDLPDEEKRRYSPRNGAPLPAGYTRQPLHSPD KNEFFLVYPPQSPFNVYPPHPPQLREVAEEVFSQLRKIGSLVEGIINDCLGLPRGFLQQFNNDRAWDFMTQLHYFPAISDVENKGNSPHQDANSVTVVFQ DDTGGLEVLRGKDWIPVPPSPDSMIVNIGDVLQVLSNNKLKSVRHRVVSPKEKDRYSCAFFYNLAVDKFVEPLPQFTSDVGEPPRYRKYLQGEYMKLRLK CKTHPPTRPEDVINVTHYAIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11180			2-oxoglutarate (2OG) and Fe(II...		Lus10023602 [exp]	0	1
					Lus10004351 [exp]	3.7	1.0000
					Lus10001326 [exp]	3.9	1.0000
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10013823 [exp]	5.0	1.0000
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10009736 [exp]	6.2	1.0000
AT1G07985			Expressed protein (.1)		Lus10029516 [exp]	7.5	1.0000
					Lus10026755 [exp]	8.0	1.0000
					Lus10017783 [exp]	8.4	1.0000
					Lus10014857 [exp]	8.5	1.0000
					Lus10018798 [exp]	8.7	1.0000
AT2G19110		ATHMA4, HMA4	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10006956 [exp]	9.0	1.0000

Compare expression of checked genes

Lus10023602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.