Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74530 356 / 2e-123 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G047400 [exp] 390 / 6e-137 AT1G74530 352 / 8e-122 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023603 pacid=23148364 polypeptide=Lus10023603 locus=Lus10023603.g ID=Lus10023603.BGIv1.0 annot-version=v1.0 ATGGACAAACCAGCGAGTGGAGCAAGGGCGATCCGGAATCCCAGAACTGTGTTCCTCATCTGGTCATTTTGTGTCATCGTCTTCTTCTGGGTTCTCCAAA TGGCTATCAAGAATTCCTCTTCTTCCTCTTCCTCACCAGATTCTTACTCTGCATATAACGAGCAAAGGGCTAGGCTGTATGATAAAATGGCCACGGATTT AGCTGAGAAAGGAGCAGCCTTTCTTAAACATGGAGAAACATCTCAGTCATTGTCCCTTTCTCATATTTTCACTTTGAAAGATGGAGCAGTTACTCCCCTA CTTAAGGCAGCTAACCCTCCTGTTCGAGCTAATGTGTTGTATCTAAAACCGGAATACTCGCTGCCCATCTCGGAAGCTGTAAAAGCTGTCTTCGCTCCAT ATTTTGATAGAGCGATTTGGTTTCAGAACTCTACAGTGTACCATTTTAGCATGTTTCATGCTTCACATCACATTACACCAGTTCCAGCGACCGAGGCCCA GATTGAAGCAGAAGCAGCTGCTGTTAGAATGGCTGTTGAGGGTTTCTGCCCTTTGAAGATAGTCTTGGATAGAGTGGTACTGACTTCAACTGGCGTGCTT CTGGGATGCTGGCAGGTGTCTGCTGGAACAGATCCTGTAAGTATTCGTTCGAAATTGAGAACCCTGCTTCCACGTGCCCCAGAAAAGCAACTTTATGACT CTGCTATTCTTCATACATCATTTGCACGAATACTTGGGCGCCCTACTTCTACATCCGAGAACACATTAGATGCAATGCAACTTTTCCGCGATCTAGTTGT GCGACTAAACAACAAACTCCGAGGAACTGAGGCAGAGGTGTCAGAGTTGTGGTATGTGGAAGAACATGATGTATTGGCACTTGCATTGGATGGAAGGATG AAGGTTAAAAGATTTCAGCTTGGCTGCAAGCAGAGCTGA
AA sequence Show only first row Show all	>Lus10023603 pacid=23148364 polypeptide=Lus10023603 locus=Lus10023603.g ID=Lus10023603.BGIv1.0 annot-version=v1.0 MDKPASGARAIRNPRTVFLIWSFCVIVFFWVLQMAIKNSSSSSSSPDSYSAYNEQRARLYDKMATDLAEKGAAFLKHGETSQSLSLSHIFTLKDGAVTPL LKAANPPVRANVLYLKPEYSLPISEAVKAVFAPYFDRAIWFQNSTVYHFSMFHASHHITPVPATEAQIEAEAAAVRMAVEGFCPLKIVLDRVVLTSTGVL LGCWQVSAGTDPVSIRSKLRTLLPRAPEKQLYDSAILHTSFARILGRPTSTSENTLDAMQLFRDLVVRLNNKLRGTEAEVSELWYVEEHDVLALALDGRM KVKRFQLGCKQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74530			unknown protein		Lus10023603 [exp]	0	1
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10036503 [exp]	1.0	0.7785
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10013929 [exp]	6.3	0.7589
AT5G60750			CAAX amino terminal protease f...		Lus10028751 [exp]	7.1	0.7564
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	17.0	0.7430
AT1G78020			Protein of unknown function (D...		Lus10019672 [exp]	23.2	0.7380
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10042551 [exp]	24.0	0.5920
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007659 [exp]	26.1	0.7555
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10042166 [exp]	27.1	0.7378
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	29.4	0.7227
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	32.0	0.7432

Compare expression of checked genes

Lus10023603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.