Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74520 245 / 2e-83 ATHVA22A HVA22 homologue A (.1) AT1G69700 202 / 2e-66 ATHVA22C HVA22 homologue C (.1) AT5G62490 186 / 2e-60 ATHVA22B ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) AT2G42820 125 / 1e-36 HVA22F HVA22-like protein F (.1) AT5G50720 117 / 5e-34 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT4G24960 113 / 3e-32 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT4G36720 66 / 3e-13 HVA22K HVA22-like protein K (.1) AT1G75700 65 / 3e-13 HVA22G HVA22-like protein G (.1) AT5G42560 61 / 4e-11 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) AT1G19950 59 / 3e-10 HVA22H HVA22-like protein H (ATHVA22H) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024234 [exp] 350 / 2e-124 AT1G74520 244 / 5e-83 HVA22 homologue A (.1) Lus10008623 [exp] 259 / 2e-89 AT1G74520 234 / 5e-80 HVA22 homologue A (.1) Lus10042193 [exp] 263 / 1e-84 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10037191 [exp] 226 / 1e-75 AT1G69700 231 / 6e-78 HVA22 homologue C (.1) Lus10031386 [exp] 122 / 2e-35 AT2G42820 246 / 4e-85 HVA22-like protein F (.1) Lus10010944 [exp] 121 / 6e-35 AT2G42820 246 / 7e-85 HVA22-like protein F (.1) Lus10043186 [exp] 120 / 1e-34 AT5G50720 169 / 1e-55 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Lus10032557 [exp] 119 / 1e-34 AT5G50720 172 / 8e-57 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Lus10010093 [exp] 62 / 7e-12 AT4G36720 202 / 2e-66 HVA22-like protein K (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062800 [exp] 252 / 3e-86 AT1G74520 255 / 4e-88 HVA22 homologue A (.1) Potri.012G069300 [exp] 249 / 3e-85 AT1G74520 259 / 1e-89 HVA22 homologue A (.1) Potri.001G006000 [exp] 130 / 1e-38 AT2G42820 235 / 1e-80 HVA22-like protein F (.1) Potri.012G101600 [exp] 119 / 1e-34 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.015G099700 [exp] 119 / 1e-34 AT5G50720 166 / 5e-54 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.014G148600 [exp] 108 / 3e-30 AT5G62490 87 / 1e-22 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) Potri.017G139000 [exp] 112 / 2e-29 AT1G74520 119 / 5e-32 HVA22 homologue A (.1) Potri.009G078500 [exp] 110 / 2e-28 AT1G74520 104 / 6e-26 HVA22 homologue A (.1) Potri.001G283000 [exp] 107 / 4e-27 AT1G74520 98 / 1e-23 HVA22 homologue A (.1) Potri.005G152100 [exp] 99 / 2e-24 AT1G69700 102 / 1e-25 HVA22 homologue C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03134 [flax] [poplar] TB2_DP1_HVA22 TB2/DP1, HVA22 family
Representative CDS sequence Show only first row Show all	>Lus10023605 pacid=23148290 polypeptide=Lus10023605 locus=Lus10023605.g ID=Lus10023605.BGIv1.0 annot-version=v1.0 ATGGGATCTGGTGCTGGTACTGGTGCTGGCAACCTCCTCAAGCTACTTGTTATTAACTTTGATGTCCTTGCTGGGCCTGTGGTTAGTCTCGTTTATCCTC TCTATGCTTCAGTCCGGGCAATAGAGTCCAAGTCTCAGACTGATGATCGCCAATGGCTGACCTATTGGGTTCTCTACTCCATGATCACACTCTTCGAGCT CACCTTTAGCAGCCTTCTTGAATGGATCCCTATCTGGTCTTATGTGAAGCTGGCTATCACTTGTTGGTTGGTCCTACCACAATTCAACGGCGCTGCTTAC GTCTACGAGCACTTCTTGAGGCCTCTTTTCCTCAACCCGCAACAGACCATAAACGTCTGGTACGTCCCAAGGAGGAAGGAAGTTTTGACTAAGAAAGAAG ATGTTTTGACTGCCGCTGAGAAATACATTGCGGAGAATGGCACCGAGGCATTCGAGACTCTCATCCACAGGGCTGATAAATCCAGGAGCACCAGCGGTTA TTCCGTCTTTGATCAGCATCATGAAGACTATGCTGATAAACCCAGGAGCAACAGCGGGTACTCGATCTTTGATTATGATTATAACGGAGACTACGAATAT TAA
AA sequence Show only first row Show all	>Lus10023605 pacid=23148290 polypeptide=Lus10023605 locus=Lus10023605.g ID=Lus10023605.BGIv1.0 annot-version=v1.0 MGSGAGTGAGNLLKLLVINFDVLAGPVVSLVYPLYASVRAIESKSQTDDRQWLTYWVLYSMITLFELTFSSLLEWIPIWSYVKLAITCWLVLPQFNGAAY VYEHFLRPLFLNPQQTINVWYVPRRKEVLTKKEDVLTAAEKYIAENGTEAFETLIHRADKSRSTSGYSVFDQHHEDYADKPRSNSGYSIFDYDYNGDYEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10023605 [exp]	0	1
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10024234 [exp]	1.0	0.9043
AT3G17020			Adenine nucleotide alpha hydro...		Lus10037761 [exp]	3.2	0.8925
AT1G16080			unknown protein		Lus10041625 [exp]	11.2	0.8998
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019475 [exp]	11.7	0.9001
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	12.0	0.9032
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	13.5	0.9022
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10035734 [exp]	14.7	0.8527
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10021498 [exp]	16.1	0.8870
AT4G32590			2Fe-2S ferredoxin-like superfa...		Lus10041038 [exp]	16.4	0.8992
AT3G25805			unknown protein		Lus10016741 [exp]	20.1	0.8861

Compare expression of checked genes

Lus10023605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.