Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62500 382 / 6e-135 ATEB1B end binding protein 1B (.1) AT3G47690 372 / 3e-131 ATEB1A, ATEB1H2 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1) AT5G67270 298 / 4e-101 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024235 [exp] 496 / 6e-180 AT5G62500 388 / 1e-136 end binding protein 1B (.1) Lus10019316 [exp] 302 / 1e-102 AT5G67270 402 / 4e-141 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) Lus10011508 [exp] 290 / 5e-98 AT5G67270 400 / 1e-140 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069400 [exp] 413 / 2e-147 AT3G47690 422 / 6e-151 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1) Potri.015G062900 [exp] 412 / 6e-147 AT5G62500 421 / 3e-150 end binding protein 1B (.1) Potri.007G048700 [exp] 313 / 3e-107 AT5G67270 436 / 8e-155 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1) Potri.005G142200 [exp] 310 / 4e-106 AT5G67270 442 / 5e-157 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03271 [flax] [poplar] EB1 EB1-like C-terminal motif CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10023606 pacid=23148386 polypeptide=Lus10023606 locus=Lus10023606.g ID=Lus10023606.BGIv1.0 annot-version=v1.0 ATGGCGTCCAACATAGGGATGATGGACGGCGCATACTTCGTCGGAAGGAATGAGATATTGACTTGGATTAACAATTGCCTTCAGCTCAACCTCTCCCGCA TTGAAGAGGCTGCATCTGGTGCTGTTCAATGTCAGATGATGGACATGACTCATCCAGGAGTGGTCCCGATGCACAAGGTGAATTTTGATGCCAAGTCGGA GTATGATTATATCCAAAATTACAAAGTTCTTCAGGATGTATTCAACAAGTTGAAAATCGAAAAGTATATTGAAGTGAACAAACTGGTGAAAGCAAGACCA TTGGACAATTTGGAGTTCCTACAATGGCTAAAGAGGTACTGTGATTCGGTCAATGGTGGCATCATGAATGAGAACTATAATCCAATTGAAAGGAGAAGTA AGGTTGGAAAAGACAAAAGTAGAGGCTCTGTAAAGGCTGCTAAATCACTGCAAGCAAATAATACACATCACTCTTCCTCGGTTGACACAGGACTGAAGAA TGCCAAGGGAGGTGCTGCATCAGGTGGACATAATTCGTCGATGGATATTCAGGCTTTGTCAACCGAGGTTGCGGACCTGAAGCTCTCAGTGGACCTTTTG GAGAAAGAGAGAGACTTCTACTTTGCGAAGCTACGTGATATAGAGATACTCTGTCAGATCCCAGAGTTGGAAACTATTCCAGTGGCAGTTGCAATCAAGA AAATACTATACGCAGCTGATGCAAAGGAATCTGCACTTGAGGAAGCTCAAGAGTATCTGGCCGAAGCTTTAAACAACGGTGACGAAGCGGAGGAGGAAGC CTGA
AA sequence Show only first row Show all	>Lus10023606 pacid=23148386 polypeptide=Lus10023606 locus=Lus10023606.g ID=Lus10023606.BGIv1.0 annot-version=v1.0 MASNIGMMDGAYFVGRNEILTWINNCLQLNLSRIEEAASGAVQCQMMDMTHPGVVPMHKVNFDAKSEYDYIQNYKVLQDVFNKLKIEKYIEVNKLVKARP LDNLEFLQWLKRYCDSVNGGIMNENYNPIERRSKVGKDKSRGSVKAAKSLQANNTHHSSSVDTGLKNAKGGAASGGHNSSMDIQALSTEVADLKLSVDLL EKERDFYFAKLRDIEILCQIPELETIPVAVAIKKILYAADAKESALEEAQEYLAEALNNGDEAEEEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10023606 [exp]	0	1
AT1G72740	MYB		Homeodomain-like/winged-helix ...		Lus10027621 [exp]	1.7	0.7635
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Lus10016790 [exp]	9.1	0.7743
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	9.6	0.7726
AT5G40270			HD domain-containing metal-dep...		Lus10013004 [exp]	14.7	0.7352
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	16.6	0.7485
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017766 [exp]	17.0	0.7313
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030310 [exp]	17.1	0.7223
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Lus10030975 [exp]	18.2	0.7635
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10003513 [exp]	19.0	0.7392
AT5G62500		ATEB1B	end binding protein 1B (.1)		Lus10024235 [exp]	22.6	0.6932

Compare expression of checked genes

Lus10023606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.