Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26030 608 / 0 FC1, FC-I, ATFC-I ferrochelatase 1 (.1.2) AT2G30390 482 / 2e-167 FC2, FC-II, ATFC-II ferrochelatase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024237 [exp] 868 / 0 AT5G26030 650 / 0.0 ferrochelatase 1 (.1.2) Lus10007924 [exp] 763 / 0 AT5G26030 640 / 0.0 ferrochelatase 1 (.1.2) Lus10013461 [exp] 565 / 0 AT5G26030 473 / 1e-165 ferrochelatase 1 (.1.2) Lus10019224 [exp] 479 / 6e-166 AT2G30390 729 / 0.0 ferrochelatase 2 (.1.2) Lus10004292 [exp] 465 / 1e-160 AT2G30390 713 / 0.0 ferrochelatase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232100 [exp] 654 / 0 AT5G26030 620 / 0.0 ferrochelatase 1 (.1.2) Potri.004G138400 [exp] 498 / 1e-173 AT2G30390 747 / 0.0 ferrochelatase 2 (.1.2) Potri.T010900 [exp] 496 / 9e-173 AT2G30390 756 / 0.0 ferrochelatase 2 (.1.2) Potri.T010901 [exp] 496 / 1e-172 AT2G30390 734 / 0.0 ferrochelatase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0043 [flax] [poplar] Chelatase PF00762 [flax] [poplar] Ferrochelatase Ferrochelatase
Representative CDS sequence Show only first row Show all	>Lus10023607 pacid=23148297 polypeptide=Lus10023607 locus=Lus10023607.g ID=Lus10023607.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCTTCTATCTCCGCCGCACTTCCCCGTACCAAACTCCCCGTCGCATCTTCTCGTAATTTTTCCAGGTCATGTTCTAAGGTCGGATCAGTTC AATCCGTGTCTTGCGTTTCGTCTGGCAAATTAGAACCTCGTGATAATCCGTCTTCTCTGGTGTTAAGTGCGAGTCCTTCTGATAAATTAACCTCCATTAA CTCAGGAGGTTTAGCTCGGAGACGGAATGTTGTTACACAATCATATGCTGCTCCTCCGGCTAGTATCTGCCCCTTCGACGAGACTTCCGTTGTTCAGAAT CATAGCAGAACCGCTGAAGAGAAGATTGGCGTGCTGCTTCTGAACCTTGGAGGGCCAGACAACCTTAATGATGTTCAGCCATTTTTGTTCAATTTGTTTG CGGATCCGGATATCATTCGATTACCTAGGCTATTCCAGTTTCTTCAAAGGCCGTTGGCACAATTGATTTCCACTCTCCGAGCACCTAAAAGTAAAGAAGG GTATGCTGCCATTGGCGGTGGCTCGCCTTTGCGTAAAATAACTGATGAGCAGGCATATGCTATCAAGGATGCTTTACTGGCAAAGGATGTAAGCGCGAAT GTCTATGTTGGAATGCGGTACTGGTACCCTTTCACTGAGGAGGCAATTCAACAGATCAAGAAGGATAGGATAACAAAGCTTGTTGTGCTGCCACTTTATC CTCAATTTTCCATATCTACAACTGGTTCCAGTCTCCGTGTTCTCGAAAATATATTCAGGGGGGATGCATATCTCTCAAGACTTCCTGTTTCTATCATACA GTCATGGTATCAAAGACAAGGTTACGTAAATTCTATGGCTGATTTGATAGAGAAGGAATTGCAGACATTTTCCAATCCTGAGGAAGTTATGGTATTCTTC AGTGCCCATGGAGTGCCAGTCAGTTATGTGGAAGAAGCAGGAGATCCGTACAGAGATCAGATGGAGGATTGCATATATTTGATTATGCAAGAGCTGAAGG CAAGGGGAGTTAACAATGATCATACTCTTGCTTACCAGAGCCGAGTTGGACCAGTGCAATGGTTGAAGCCCTATACTGATGAGGTCCTAGTAGAGCTTGG GAAGAAAGGGGTGAAAAGCCTCTTAGCAGTCCCTGTTAGCTTTGTGAGTGAGCATATAGAAACACTTGAAGAAATCGACATGGAGTACAGGGAACTGGCA CTTGAATCTGGGATTGAGAACTGGGGACGAGTGCCTGCTTTAGGTTGCACTTCGTCGTTCATCACCGATCTGGCCGATGCAGTTGTTGAAGTGTTGCCAT CTGCTAAAGCAATTGTAGTAACCTCTACTGACAGCGCGGAAGAAGCTGACGAATATGACCCCTTAAAATACGCAATCAAATTGTTATTTGGTTCAGTTTT AGCGTTTGTGCTTCTTTTCTCACCGAAGATGTTCCTCGCTTTCAGGAACCAGCTTCTTTAG
AA sequence Show only first row Show all	>Lus10023607 pacid=23148297 polypeptide=Lus10023607 locus=Lus10023607.g ID=Lus10023607.BGIv1.0 annot-version=v1.0 MEAASISAALPRTKLPVASSRNFSRSCSKVGSVQSVSCVSSGKLEPRDNPSSLVLSASPSDKLTSINSGGLARRRNVVTQSYAAPPASICPFDETSVVQN HSRTAEEKIGVLLLNLGGPDNLNDVQPFLFNLFADPDIIRLPRLFQFLQRPLAQLISTLRAPKSKEGYAAIGGGSPLRKITDEQAYAIKDALLAKDVSAN VYVGMRYWYPFTEEAIQQIKKDRITKLVVLPLYPQFSISTTGSSLRVLENIFRGDAYLSRLPVSIIQSWYQRQGYVNSMADLIEKELQTFSNPEEVMVFF SAHGVPVSYVEEAGDPYRDQMEDCIYLIMQELKARGVNNDHTLAYQSRVGPVQWLKPYTDEVLVELGKKGVKSLLAVPVSFVSEHIETLEEIDMEYRELA LESGIENWGRVPALGCTSSFITDLADAVVEVLPSAKAIVVTSTDSAEEADEYDPLKYAIKLLFGSVLAFVLLFSPKMFLAFRNQLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10023607 [exp]	0	1
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Lus10024237 [exp]	1.0	0.9345
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	6.9	0.8870
AT2G36430			Plant protein of unknown funct...		Lus10035568 [exp]	18.8	0.9127
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10033406 [exp]	20.2	0.9117
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10034667 [exp]	21.8	0.8614
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10041685 [exp]	22.1	0.8673
AT1G74360			Leucine-rich repeat protein ki...		Lus10003478 [exp]	24.7	0.8889
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10019635 [exp]	30.7	0.9070
AT1G69670		CUL3B, ATCUL3B	ARABIDOPSIS THALIANA CULLIN 3B...		Lus10009610 [exp]	56.0	0.8877
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	56.1	0.8533

Compare expression of checked genes

Lus10023607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.