Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26930 355 / 2e-120 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 348 / 2e-117 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G14330 342 / 6e-115 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74510 340 / 2e-114 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G60570 273 / 7e-89 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27150 221 / 3e-68 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G40680 196 / 1e-58 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 112 / 2e-27 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 100 / 3e-23 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G55270 98 / 3e-22 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012841 [exp] 366 / 1e-124 AT2G02870 568 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10030489 [exp] 364 / 7e-124 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10036735 [exp] 361 / 1e-122 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037196 [exp] 357 / 1e-121 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037413 [exp] 300 / 2e-99 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 299 / 4e-99 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10024239 [exp] 280 / 1e-92 AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 106 / 3e-25 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 104 / 2e-24 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063200 [exp] 374 / 2e-127 AT1G74510 529 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.019G042100 [exp] 299 / 2e-98 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G077800 [exp] 295 / 1e-96 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G331500 [exp] 251 / 1e-79 AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G069500 [exp] 250 / 2e-79 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 110 / 5e-27 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.001G008000 [exp] 110 / 8e-27 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 107 / 1e-25 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 107 / 1e-25 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 103 / 2e-24 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10023608 pacid=23148393 polypeptide=Lus10023608 locus=Lus10023608.g ID=Lus10023608.BGIv1.0 annot-version=v1.0 ATGGTGAAGCAATCATCACTACTGGTAGCGGGTAGAAAAGAAACGGTTAATGAGACCGAGTCCAACCCCAAGCAGCAGCTGATAACTATGCTAGGGCGGG ACCTAACAATCAGCTGCCTACTCCGCTTACCGAGGATCGAATACGACACCGTTTCATCCATCAGCAGGGGATTCAAGTCCCTAATCAAAAGCGGCGAGGT CTACAAGCTCCGCCGAGAAGCCGGGATATCCGAACCCTGGGTCTATTTCTCATGCAACCTCATGGAATGGGAAGCCTTCGACCCATCCACCAACCGCTGG ATCCGCCTCCCGAAAATGCCATTCGAAAGCTGCTTCGCCTTCTCCGACAAGGAGTCCCTCGCCGTAGGGACAGACATCCTCGTCTTCGGCAGGGAAGTCA ACGGCCCGGCGGTGTACAGGTACAGCCTCCTCGAGAACAAGTGGACCACGACGGCACAAAACCTCAGCAAGGTGATGAACACACCTCGCTGCCTGTTTGC CTCGTCAGCGGTGGGGACCACCGCCTACGTGGCGGGCGGGTGCACCCTCGATGGGGACGATCTAAACTCGGCTGAGATGTACGATGGTGAGAAGGGCACG TGGACGGAGATCCCGAGTATGAACACGGCGAGGAGGTCGTGCGCGGGTGTGATCATGGACGGGAAGTTTTACGTGGTTGGTGGGACCACTAAAAAGGGGG AAGCGATAAGGTCTGCTGAGGTGTACGATCCGGTTGGGATGACGTGGGAGGTGATTCCGGAGATGTTTCCTCGGGCGGTTGAGTTGACGGATTGTCCGCC GTTGGTTGCGGTGGTGAGGAACGAGATGTACGCGGCGGATCCGGAGAATATGGAAGTCTTGAAGTATTCGAAGGAGAAGAACGTTTGGGTGAGGGTTGGG AAGATGCCGGAGAAGGTGTCGACTAATAAAGGATGGGGTGTCGGGTTTAGGGCTTGCGGGGATAGGCTGCTCGTGATCGGTAGTAGTACTGATGGTGAAT CGGTGCTGGAGCTCAATGCTTGGGTTCCGCCGGCGGAAGGTGGCGGTGACGGTGGTGGTGAGCCTATTAAGTGGGAAGTGATTGGTAAGAAGGACATGGT GACGTTTGTTTACAATTGTGCTATCATGGGATGTTGA
AA sequence Show only first row Show all	>Lus10023608 pacid=23148393 polypeptide=Lus10023608 locus=Lus10023608.g ID=Lus10023608.BGIv1.0 annot-version=v1.0 MVKQSSLLVAGRKETVNETESNPKQQLITMLGRDLTISCLLRLPRIEYDTVSSISRGFKSLIKSGEVYKLRREAGISEPWVYFSCNLMEWEAFDPSTNRW IRLPKMPFESCFAFSDKESLAVGTDILVFGREVNGPAVYRYSLLENKWTTTAQNLSKVMNTPRCLFASSAVGTTAYVAGGCTLDGDDLNSAEMYDGEKGT WTEIPSMNTARRSCAGVIMDGKFYVVGGTTKKGEAIRSAEVYDPVGMTWEVIPEMFPRAVELTDCPPLVAVVRNEMYAADPENMEVLKYSKEKNVWVRVG KMPEKVSTNKGWGVGFRACGDRLLVIGSSTDGESVLELNAWVPPAEGGGDGGGEPIKWEVIGKKDMVTFVYNCAIMGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26930			Galactose oxidase/kelch repeat...		Lus10023608 [exp]	0	1
					Lus10000085 [exp]	2.0	0.8043
					Lus10040421 [exp]	2.2	0.8508
					Lus10000901 [exp]	3.5	0.7838
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10029061 [exp]	4.5	0.7791
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10000678 [exp]	4.6	0.7593
AT1G58060			RNA helicase family protein (....		Lus10012694 [exp]	5.1	0.6934
AT5G14380		AGP6	arabinogalactan protein 6 (.1)		Lus10022309 [exp]	5.2	0.7303
AT1G35467		RALFL5	RALF-like 5 (.1)		Lus10006213 [exp]	6.7	0.6805
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10006924 [exp]	7.5	0.6807
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	7.9	0.7867

Compare expression of checked genes

Lus10023608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.