Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47700 828 / 0 MAG2 maigo2, RINT-1 / TIP-1 family (.1) AT1G08400 392 / 3e-124 RINT-1 / TIP-1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024240 [exp] 1398 / 0 AT3G47700 922 / 0.0 maigo2, RINT-1 / TIP-1 family (.1) Lus10036104 [exp] 405 / 1e-128 AT1G08400 687 / 0.0 RINT-1 / TIP-1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063100 [exp] 954 / 0 AT3G47700 872 / 0.0 maigo2, RINT-1 / TIP-1 family (.1) Potri.009G020600 [exp] 448 / 2e-145 AT1G08400 713 / 0.0 RINT-1 / TIP-1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04437 [flax] [poplar] RINT1_TIP1 RINT-1 / TIP-1 family
Representative CDS sequence Show only first row Show all	>Lus10023609 pacid=23148323 polypeptide=Lus10023609 locus=Lus10023609.g ID=Lus10023609.BGIv1.0 annot-version=v1.0 ATGACGGACTCAACCCTAACTCTCCCTCCGCCCGCGATTCTTTCCTCCTCTGTCATCACATTTCTGAACGATAGACTCAAAGACGAGCAAGATCTCGAGC AGGCACCTGCTATAGTCTCGGAGCTACAGTCACAATGTGTCGATTTGGACCAGTCTCTCACTTCCCTCAATTCCACTCTCCAATCGAGTCTTCTTGCTTA CGCCTCCTCCTCCGATCGAATTCACGGCATCGTCACTGATACCACTGCCAAGCTCACCGATCTCGGCTCATTGACCTCCGCTTCTAGTTCTTCTTCAGAT GGAGGATTGAAGGAGCAGGTATTGGCGGAGGAGTTGCCAGCGCTGGCAAAGGAGGTTGCTAGAGTGGAAATAGTTCGAGCTTATGCTAGTACTGCATTGA AGCTCGACGGTTTGGTTGGTGATATTGAAGATGCTGTTGCTTTTGTCATGAACAGAAACCTGAAGCGTCCTGCTCCACAAACTTCTGATGAAATGTGTAC TCGTGCTATTGAAACACTTGGAAAAACTGAAGATGTTTTAACTTATATTACAAAGAAACGGTCTCAATGGACCCGACTTGTATCAGCAGTTGATGATAGA GTAGATCGAGCATTAGCCACTTTGAGACCGCAGCAAATTGCAGATCACCGAATGCTCCTTACATCGCTTGGGTGGCCACCACCACTTAGCTCATTAACCT CGCTAATACTTGATACTGGAAAATCGTCTGAAGCATCTAATCCTCTCTTCACAATGCACGGCGACCTCAAGAATAAATATTGTGAAAACTTCCGTGCATT GTGCTGTTTACAAGAGTTGCAGATACGAAGAAAGGGTCGGCAACTTGAGGGCCACAACAGGGAAGTTGCTCTTCACCAGCCACTTTGGGCGGTTGAAGAA CTCGTAAATCCTATCTCAATTGCATGCCAACGGCATTTTACAAAATGGACTGATAAGCCAGATTTTATCTTTGCACTTGTCTACAAGATTACCAGGGACT ATGTTGACACAATGGATGAATTGCTACAACCTCTGGTTGACGAAGCTAGGCTGGTGGGCTATAGTTGTAGAGAAGAATGGATTTCAGCTATGGTTACATC TTTGTCTACATACCTGGCAAAAGAGGTCTTCACTGGCTATATTAGCCAATTGGAAGATGAGCATGTTAGTGGTATTGGGTCACAGGCAAGAATGTCATGG CTGCATCTAGTTGACCTGATGATTTCTTTTGATAAACGTGTTATGTCTCTGGCAACCCATTCTGGGGTTTTGATGTCTGTTGAGGAAGACAAGAACCTCC AGAAAATATCATCTGTATCTGTTTTCTGTGACAAACCTGATTGGCTTGATTTGTGGGCAGAAATCGAGCTAAGTGACACACTTGAGAAGTTAAAAGCCGA GGCGGAGGATGAGAGCCAATGGATATTAAAAGTTCAGGGGGCAGCTCTTCTATCTGGTCCTGAAAATTACAAGTCTCCTCTAGTTTCGAGTGGCTTCCTC AAGCATCTGTCTTTAGTGATTGATCGATGTCGATCACTGCCTACTATATCTTTGAGGTACAGATTTCTTCGGTTAGTCGGTGCACCTATAGTACATAGAT TTTTAGACTGTGTGCTACATAGGTGTCAAGAAGCTGAAGGAATGACTGCACTAGCTGATGATGACGGTTTAATAAAGGTGGTGAACTCAATCAATGCTGT TCACTACTTTGAGTCTGTAATTAAAGAATGGTGTGAAGATGTGTTCTTTGTCGAGGTTGGGTATGCTCAAAACGATCCTGATGGCACAGAGAGTCCAGTT GATTCATGGATGGGTGGGATTTTTGAAGAGGAGATAAGAAAGCTGGAATCTTTCAGGAAGGAATGGGTTGAGAAAGTATCAGTGGTTATTCTGAGGGGAT TCGAAGCTAGGTGTCGAGAATACCTGAAAAACAAGAAGCAATGGCAGGAGAAGAGGGAAGAAGGTTGGGCGGTGTCCAAAAATTTAGTTGGCAGTCTAGA TTATCTACAGGCAAAACTGGCAGTTGTGGAGGAAAACATGAACAGTATGGATTTTGTTAGTGTTTGGAGAAGCTTGGCGTCTGGGATCGATGGTGCAATC TTTAACGGCGTGCTTATGAGCAGTGTAAAGTTTTACGATAGCGGTGTAGAAAGTTTTAGCAGCGACTTAGAGGTCGTGTTTGGAGTGTTTAGAGGTTGGT GTCTAAGACCACAAGGCTTTTTCCCCAAGATAAGTGAGGGACTGAAGCTGTTGAAGATGGGGAAGAAGCAGAATGAATTGGGTATAACTGGAGGTGAGAA ATGGATGAAGGAGAATGGAATTAGGCACATTGGTTTGCGGGGACTAGAGAGGATACTAAAAACTCGAGTTTTTCCAAGTTAA
AA sequence Show only first row Show all	>Lus10023609 pacid=23148323 polypeptide=Lus10023609 locus=Lus10023609.g ID=Lus10023609.BGIv1.0 annot-version=v1.0 MTDSTLTLPPPAILSSSVITFLNDRLKDEQDLEQAPAIVSELQSQCVDLDQSLTSLNSTLQSSLLAYASSSDRIHGIVTDTTAKLTDLGSLTSASSSSSD GGLKEQVLAEELPALAKEVARVEIVRAYASTALKLDGLVGDIEDAVAFVMNRNLKRPAPQTSDEMCTRAIETLGKTEDVLTYITKKRSQWTRLVSAVDDR VDRALATLRPQQIADHRMLLTSLGWPPPLSSLTSLILDTGKSSEASNPLFTMHGDLKNKYCENFRALCCLQELQIRRKGRQLEGHNREVALHQPLWAVEE LVNPISIACQRHFTKWTDKPDFIFALVYKITRDYVDTMDELLQPLVDEARLVGYSCREEWISAMVTSLSTYLAKEVFTGYISQLEDEHVSGIGSQARMSW LHLVDLMISFDKRVMSLATHSGVLMSVEEDKNLQKISSVSVFCDKPDWLDLWAEIELSDTLEKLKAEAEDESQWILKVQGAALLSGPENYKSPLVSSGFL KHLSLVIDRCRSLPTISLRYRFLRLVGAPIVHRFLDCVLHRCQEAEGMTALADDDGLIKVVNSINAVHYFESVIKEWCEDVFFVEVGYAQNDPDGTESPV DSWMGGIFEEEIRKLESFRKEWVEKVSVVILRGFEARCREYLKNKKQWQEKREEGWAVSKNLVGSLDYLQAKLAVVEENMNSMDFVSVWRSLASGIDGAI FNGVLMSSVKFYDSGVESFSSDLEVVFGVFRGWCLRPQGFFPKISEGLKLLKMGKKQNELGITGGEKWMKENGIRHIGLRGLERILKTRVFPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Lus10023609 [exp]	0	1
AT5G23680			Sterile alpha motif (SAM) doma...		Lus10036012 [exp]	8.1	0.6899
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Lus10038293 [exp]	8.9	0.6949
AT4G38500			Protein of unknown function (D...		Lus10025082 [exp]	18.4	0.6576
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10040157 [exp]	21.7	0.6226
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10023571 [exp]	22.6	0.6808
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10008156 [exp]	38.0	0.6490
AT3G57910			D111/G-patch domain-containing...		Lus10023819 [exp]	41.9	0.6193
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001748 [exp]	46.5	0.6456
AT4G36420			Ribosomal protein L12 family p...		Lus10041783 [exp]	50.2	0.6009
AT5G51670			Protein of unknown function (D...		Lus10031110 [exp]	57.2	0.6129

Compare expression of checked genes

Lus10023609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.