Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74500 102 / 5e-30 bHLH TMO7, PRE3, ATBS1, bHLH135 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) AT1G26945 99 / 2e-28 bHLH KDR, PRE6 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G28857 97 / 4e-28 bHLH PRE5 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G39860 93 / 3e-26 bHLH BNQ1, BHLH136, PRE1 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT3G47710 91 / 2e-25 bHLH BNQ3, PRE4, bHLH161 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) AT5G15160 83 / 3e-22 bHLH BNQ2, BHLH134, PRE2 BASIC HELIX-LOOP-HELIX PROTEIN 134, BANQUO 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024241 [exp] 125 / 4e-39 AT3G47710 123 / 2e-38 BASIC HELIX-LOOP-HELIX PROTEIN 161, BANQUO 3 (.1) Lus10036732 [exp] 88 / 4e-24 AT1G26945 115 / 6e-35 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10037198 [exp] 85 / 6e-23 AT1G26945 114 / 1e-34 KIDARI, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012842 [exp] 79 / 2e-20 AT3G28857 103 / 3e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030490 [exp] 76 / 4e-19 AT3G28857 102 / 4e-30 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10008626 [exp] 62 / 5e-14 AT3G28857 71 / 1e-17 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030675 [exp] 51 / 9e-10 AT3G28857 61 / 8e-14 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005248 [exp] 47 / 3e-08 AT3G28857 57 / 2e-12 Paclobutrazol Resistance 5, basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063300 [exp] 105 / 3e-31 AT1G74500 75 / 3e-19 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) Potri.012G069500 [exp] 105 / 3e-31 AT1G74500 81 / 2e-21 TARGET OF MONOPTEROS 7, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 (.1) Potri.017G081300 [exp] 102 / 4e-30 AT5G39860 126 / 1e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.004G128400 [exp] 101 / 1e-29 AT5G39860 124 / 8e-39 PACLOBUTRAZOL RESISTANCE1, BANQUO 1, BASIC HELIX-LOOP-HELIX PROTEIN 136, basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10023610 pacid=23148389 polypeptide=Lus10023610 locus=Lus10023610.g ID=Lus10023610.BGIv1.0 annot-version=v1.0 ATGTCGAGCAGACGGTCGAGAACGAGGAGTTCAGGAAGTAGCAGGATCACCGACGACCAGATCCTTGACCTTGTTACTAAGTTGCAGCAGCTCCTCCCCG AGCTCCGAAACCGACGTCGTTCCGACAAGGTATCAGCAGCAAATGTGTTACAAGAGACGTGCAACTACATAAGAAGCTTACACAGAGAAGTAGACGATCT GAGCGAGCGTCTATCGGGTCTACTCGCAACTACTGACAGCNNNNNNNNNCGCCCAAGCCGCTCTCATTCGCAACTTACTCAACTAGCCTAG
AA sequence Show only first row Show all	>Lus10023610 pacid=23148389 polypeptide=Lus10023610 locus=Lus10023610.g ID=Lus10023610.BGIv1.0 annot-version=v1.0 MSSRRSRTRSSGSSRITDDQILDLVTKLQQLLPELRNRRRSDKVSAANVLQETCNYIRSLHREVDDLSERLSGLLATTDSXXXRPSRSHSQLTQLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10023610 [exp]	0	1
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	1.4	0.9742
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10021845 [exp]	4.0	0.9625
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	6.0	0.9560
AT5G14020			Endosomal targeting BRO1-like ...		Lus10012563 [exp]	6.9	0.9389
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	6.9	0.9514
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	8.1	0.9505
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	11.5	0.9208
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10020875 [exp]	12.3	0.9067
AT3G20300			Protein of unknown function (D...		Lus10009722 [exp]	13.3	0.9223
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	13.7	0.9279

Compare expression of checked genes

Lus10023610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.