Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47800 460 / 4e-163 Galactose mutarotase-like superfamily protein (.1) AT5G15140 382 / 1e-130 Galactose mutarotase-like superfamily protein (.1) AT3G17940 336 / 2e-114 Galactose mutarotase-like superfamily protein (.1) AT3G01260 248 / 5e-79 Galactose mutarotase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007251 [exp] 385 / 3e-133 AT5G15140 404 / 7e-139 Galactose mutarotase-like superfamily protein (.1) Lus10015365 [exp] 382 / 8e-132 AT5G15140 403 / 7e-138 Galactose mutarotase-like superfamily protein (.1) Lus10005251 [exp] 358 / 2e-123 AT5G15140 370 / 2e-126 Galactose mutarotase-like superfamily protein (.1) Lus10010976 [exp] 346 / 2e-118 AT3G17940 497 / 4e-178 Galactose mutarotase-like superfamily protein (.1) Lus10030673 [exp] 342 / 3e-114 AT5G15140 358 / 1e-118 Galactose mutarotase-like superfamily protein (.1) Lus10000452 [exp] 316 / 7e-107 AT3G17940 436 / 1e-154 Galactose mutarotase-like superfamily protein (.1) Lus10026181 [exp] 313 / 2e-105 AT3G17940 500 / 3e-179 Galactose mutarotase-like superfamily protein (.1) Lus10024242 [exp] 237 / 6e-78 AT3G47800 155 / 3e-46 Galactose mutarotase-like superfamily protein (.1) Lus10042485 [exp] 64 / 1e-12 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G128800 [exp] 445 / 3e-157 AT3G47800 459 / 1e-162 Galactose mutarotase-like superfamily protein (.1) Potri.017G080200 [exp] 409 / 5e-143 AT3G47800 406 / 9e-142 Galactose mutarotase-like superfamily protein (.1) Potri.004G129700 [exp] 398 / 1e-138 AT3G47800 414 / 5e-145 Galactose mutarotase-like superfamily protein (.1) Potri.017G080000 [exp] 397 / 2e-138 AT5G15140 432 / 3e-150 Galactose mutarotase-like superfamily protein (.1) Potri.017G080100 [exp] 392 / 2e-136 AT3G47800 397 / 3e-138 Galactose mutarotase-like superfamily protein (.1) Potri.017G129300 [exp] 342 / 1e-116 AT3G17940 496 / 1e-177 Galactose mutarotase-like superfamily protein (.1) Potri.012G045875 [exp] 338 / 4e-115 AT3G17940 555 / 0.0 Galactose mutarotase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10023611 pacid=23148252 polypeptide=Lus10023611 locus=Lus10023611.g ID=Lus10023611.BGIv1.0 annot-version=v1.0 ATGGCCAACATTTGTTTTCGATATACCCTCTTCTTCCTTCTCCTACTTGCGACCCAGCTCCAGGCAGAGGAGGCAGCGGTGAAAACCTATGAGCTAAAGA GGGGAAATATCAAATTGAGATTCACCAACTATGGAGCCACCTTGGATTCCGTCACTCTTCCTGACAAACACGGAAAGTTAGCTGATATTTCTCTGGGGTT TGATAATCTCAACGATTTCAAGAACGATACAGTTTACTTTGGGAACATTGTTGGACGAGTAGCCAACAGGATTGGAGGTGCAGAGTTTAAATTGAATGGA AAAGTTTACAAATTGCCTGCTAACGATGGCAACAACACTTTACATGGTGGTACTAGAGGATTTGGGGACGTTATCTGGAAAGTCACAAAGCTAGTGGAAA ACAGCAAGCAGTCGTACATTACTTTCACCTATGACAGTTTTGATGGCGAACAAGGTTTCCCTGGGGAGCTATCAGTGTCAGTAACATACATGATACTGAG CAAAAACACAATGGCAATCAAAATGACAGCAAAACCTCACAACAAACCAACACCAGTCAACCTAGCATACCACGGCTACTGGAACCTCGGCGGACACAAC AGTGGAACCATCCTCAACCACACCATCCAGCTCTTCTCCCACCACATCACTCCTGTCGACGACCACCTCATCCCGACCGGATCTTTGACTTCTGTCAAGG GCACCCGTTACGACTTCCTCGAGCCTCGACAAATCGGTAGCAGGATCGACCATGATTTCCCCAAAGGGTACGACATTAACTACGTGCTGGATGACCTTTC TCCAGGCCACCTCAAGAAAGCTGCTGTTGTTAAGGATCATGTCTCAGGGAGGAAACTTGAGCTGTGGACTAATCAGCCTGGAGTCCAGTTTTATACTAGC AATATGTTGAATGATGTCAAGGGGAAAGATGGGTTCACTTATCAGAAATATGCTGGTTTCTGTTTGGAGACACAGGGGTTTCCTGACTCAGTCAATCACC AGAATTTTCCTTCACAGATTGTCAACCCTGGTCAAACTTATGAACATTACATGGTTTATAGGTTCACTGCAAGTTAA
AA sequence Show only first row Show all	>Lus10023611 pacid=23148252 polypeptide=Lus10023611 locus=Lus10023611.g ID=Lus10023611.BGIv1.0 annot-version=v1.0 MANICFRYTLFFLLLLATQLQAEEAAVKTYELKRGNIKLRFTNYGATLDSVTLPDKHGKLADISLGFDNLNDFKNDTVYFGNIVGRVANRIGGAEFKLNG KVYKLPANDGNNTLHGGTRGFGDVIWKVTKLVENSKQSYITFTYDSFDGEQGFPGELSVSVTYMILSKNTMAIKMTAKPHNKPTPVNLAYHGYWNLGGHN SGTILNHTIQLFSHHITPVDDHLIPTGSLTSVKGTRYDFLEPRQIGSRIDHDFPKGYDINYVLDDLSPGHLKKAAVVKDHVSGRKLELWTNQPGVQFYTS NMLNDVKGKDGFTYQKYAGFCLETQGFPDSVNHQNFPSQIVNPGQTYEHYMVYRFTAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47800			Galactose mutarotase-like supe...		Lus10023611 [exp]	0	1
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	1.4	0.9581
AT5G57655			xylose isomerase family protei...		Lus10006983 [exp]	3.6	0.9612
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029175 [exp]	4.5	0.9491
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	9.6	0.9495
AT2G22730			Major facilitator superfamily ...		Lus10003528 [exp]	9.7	0.9335
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10037156 [exp]	9.8	0.9391
AT4G17900			PLATZ transcription factor fam...		Lus10030968 [exp]	10.1	0.9348
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10012990 [exp]	10.4	0.9416
AT5G57655			xylose isomerase family protei...		Lus10001321 [exp]	10.4	0.9531
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	10.6	0.9438

Compare expression of checked genes

Lus10023611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.