Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47780 1164 / 0 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT3G47750 1111 / 0 ATATH3, ABCA4 ATP-binding cassette A4, ATP binding cassette subfamily A4 (.1) AT3G47740 1099 / 0 ATATH2, ABCA3 A. THALIANA ABC2 HOMOLOG 2, ATP-binding cassette A3, ABC2 homolog 2 (.1) AT3G47790 1088 / 0 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT3G47770 1044 / 0 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1) AT5G61700 1042 / 0 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT3G47760 1015 / 0 ATATH4, ABCA5 A. THALIANA ABC2 HOMOLOG 4, ATP-binding cassette A5, ABC2 homolog 4 (.1) AT5G61740 1004 / 0 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT3G47730 285 / 9e-82 ABCA2, ATATH1 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) AT5G61730 261 / 8e-74 ABCA9, ATATH11 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024243 [exp] 939 / 0 AT3G47780 530 / 1e-178 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10024244 [exp] 278 / 4e-79 AT3G47730 1349 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10023613 [exp] 276 / 1e-78 AT3G47730 1360 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10012755 [exp] 251 / 1e-68 AT2G41700 2655 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10023157 [exp] 236 / 1e-63 AT2G41700 1486 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10004262 [exp] 189 / 5e-50 AT3G47730 840 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10042172 [exp] 92 / 8e-19 AT5G61730 449 / 5e-147 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) Lus10020188 [exp] 87 / 4e-18 AT1G65410 500 / 2e-179 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10035453 [exp] 86 / 4e-18 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063400 [exp] 1338 / 0 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.012G069700 [exp] 1321 / 0 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.006G049300 [exp] 287 / 1e-80 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.015G063500 [exp] 248 / 8e-69 AT3G47730 1288 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.012G069800 [exp] 248 / 9e-69 AT3G47730 1245 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.015G027600 [exp] 93 / 3e-19 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.018G132000 [exp] 87 / 1e-18 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.013G117700 [exp] 87 / 3e-17 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.002G212701 [exp] 83 / 1e-16 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.002G019600 [exp] 84 / 5e-16 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023612 pacid=23148339 polypeptide=Lus10023612 locus=Lus10023612.g ID=Lus10023612.BGIv1.0 annot-version=v1.0 ATGGCGGAGTCGGAGGCTTCACGAGGTCGTGCAAGTTTCTGTACTCAGGCTGATGCCCTGCTTAGAAAGAACTTAACCTATCAGAAACGAAACGCCAAGA CGAATTGTCGTCTCATTTCCTTTCCATTAATCCTTTGTGTTCTCCTTGTTCTTGCTCAAAATCTGGTTAATAATCAGTTAAACAAGGATGACTTCAAGTG CGGCTGTGTTTGTATTGATACAAATGTTGACGGGAAATGTGAGAAAGTCTGTGGACTGCAGTACTCAGATGCGCAACAAGCTGCTGCCTGCCCTGTTCCT AATCCCCCAGAATGGCCTCCCCTTTTGCAAGTCCCCCCACCTCATTTTCGGGCAGTCAAAACTGATTTCCTTCCATTTAATGACTTACCAGATGAGTCTT GCCGGCTTACAGGGACCTGTCCCGTAACTATACTTGTCACTGGAAATAATCAGACCCTTGGAGAAAGCTTGGCTGGAAACATGTTCAGCAGCTCTTCCAC ATTCAACTTCTCAACTGTTGCAGATCTTGTAGGCAACTCTGTATTGGGATCAGATACAGAGACTGAATCCAATAATTTAGTTGACCCTGCTTTTACTGAC GGTTCTCCTCTCTACAATGTGCGACCTCAGTGTGGAACAATCCCTCCCTTCTCCCTCAATATCAGCTCGCAATCTATAAATTTTGAGAAAGAGGTGAGAT GTGTTCAAGGCCTGCACTTGTGGCGCAATAGTGCATCTGACATAAATGATGAAATATACAAAGGTTATTACAAGGGAAATTCAGAGGAGAAAATAAATGA GATAATTGCTGCATATGATTTCTTGAATTCTGATGGGAACAGTTTGAACATGAACATTTGGTACAACTCTACTCCTAAGGATGACGGTGGTGGTGGTGCA TTCAATTTGCTGCGGGTTCCACGAATTGTCAATTTGGCATCAAATGCATATCTTCAGCTTTTAAAAGGACCCAGTGCAAGAATGGAACTGGAGTTTGTTA AAGAAATGCCTAAACCTCCAACAGACTTTCGGTTGGATCTCGCATCTGTTCTTGGCACTCTCTTTTTTACTTGGGTTATTCTACAACTATTTCCTGTCGC TTTGACATCATTGGTTTATGAGAAACAACAAAGATTAAGGATTATGATGAAAATGCACGGGCTCGGTGATGGGCCTTATTGGGTGATATCATATGCATAC TTTTTTGCCATATCTCTGCTGTATATGTTCGTTTTCGTGGCGTTTGGGTCAGTCATAGGCTTGAAATTTTTTACGCTGAATGACTACAGCATCCAATTTG TGTTTTACTTCATCTATATCAACTTGCAAATTTCCATGGCGTTCCTAGTTGCAGCATTCTTTTCAAATGTTAAAACTGCTACAGTTGTAGCCTACATATG CGTTTTTGGAACTGGACTTCTTGGTGGCTTCTTTTATCAGTCCTTCCTTGAGGATACGTCATTTCCAAGAGGCTTGCTAATATTGCTGGAGCTGTATCCC GGATTCTCTCTGTATCGTGGATTATACGAGTTCTCTCAATACTCTAGTATAGGGGTCGCAAATGGAACTAATGGGATGCGTTGGGAAAATTTGAATGACA GTGGAAACGGGATGAAGGAAGTGTTCACTATTATGACTGTAGAATGGATTGTGGTTCTCTTTGTCGCATATTACATTGATCGAGTGTTATCATCTGGGAA AAGTCCTTTATTTTTCTTCAAAAACTTTGGGAAGAAACCATCTGGATCTCTCCGGATGCCTAGTTTGAGAAGGCAGGGATCTAAAGTTTTCGTAAATCTG GAGAAACCTGATGTTGTGCAAGAGCGGGAAAAGGTAGAGCAATTGCTACTAGAACCAAATACAAGCCAGGCAATAGTCTGCGACAACCTCAGAAAGGTTT ATCCAGGGAGGGATGGGAATCAAGCCAAGTTGGCGGTGAAAGGATTATCGCTTGCGCTTCCTCGAGGGGAGTGCTTTGGTATGCTTGGTCCAAATGGTGC TGGAAAGACATCGTTCATTAGTATGATGATCGGGCTCACAAAACCCACCTCAGGTGCAGCGTATGTTGAAGGTTTAGACATACGGACCCACATGGAGTAT GTTTATACCAACATGGGCGTGTGTCCCCAGCACGACCTGCTTTGGGAGACTTTGACGGGAAGGGAGCACTTGTTATTCTATGGAAGACTAAAGAATCTGA AAGGCTCTGTCTTAACAAGAGCAGTGGAAGATTCTCTTCGAAGCTTGAATCTTTTCAACGGAGGGGTCGCTGACAAACAAGCAGGGAAATACAGTGGAGG TATGAAAAGGAGACTTAGTGTTGCCATATCACTGATAGGGGATCCCAAGGTTGTGTATATGGACGAACCTAGCACTGGACTTGATCCCGCTTCGAGAAGT TGTTTATGGAATGTTTTGAAGCGTGCAAAACAAGACAGAGCAATCATTCTCACCACACACTCAATGGAAGAAGCAGAGGCTCTTTGTGACCGGTTGGGAA TTTTCGTTGATGGTGGGTTGCAGTGTATAGGGAACCCAAAAGAGCTGAAGGCCAGATATGGAGAAACGTATGTGTTCACAATGACAACAGGTGCAGAGAA TGAGACAGAAGTGGAGCAAATGGTGAAAGAGCTTTCCCCTAGCGCTGAGAGAACGTACCATCTATCTGGAACCCAGAAGTTTGAGATGCCGAAACAGGAG GTGAGGATAGCAGATGTGTTTAGGGCTGTTGAGAATGCAAAAGCCGAGTTCCCGGTTTTCGCTTGGGGGATTTCGGACACCACCTTGGAGGACGTCTTTA TCAAGGTGGCAACAGCTGCTTAG
AA sequence Show only first row Show all	>Lus10023612 pacid=23148339 polypeptide=Lus10023612 locus=Lus10023612.g ID=Lus10023612.BGIv1.0 annot-version=v1.0 MAESEASRGRASFCTQADALLRKNLTYQKRNAKTNCRLISFPLILCVLLVLAQNLVNNQLNKDDFKCGCVCIDTNVDGKCEKVCGLQYSDAQQAAACPVP NPPEWPPLLQVPPPHFRAVKTDFLPFNDLPDESCRLTGTCPVTILVTGNNQTLGESLAGNMFSSSSTFNFSTVADLVGNSVLGSDTETESNNLVDPAFTD GSPLYNVRPQCGTIPPFSLNISSQSINFEKEVRCVQGLHLWRNSASDINDEIYKGYYKGNSEEKINEIIAAYDFLNSDGNSLNMNIWYNSTPKDDGGGGA FNLLRVPRIVNLASNAYLQLLKGPSARMELEFVKEMPKPPTDFRLDLASVLGTLFFTWVILQLFPVALTSLVYEKQQRLRIMMKMHGLGDGPYWVISYAY FFAISLLYMFVFVAFGSVIGLKFFTLNDYSIQFVFYFIYINLQISMAFLVAAFFSNVKTATVVAYICVFGTGLLGGFFYQSFLEDTSFPRGLLILLELYP GFSLYRGLYEFSQYSSIGVANGTNGMRWENLNDSGNGMKEVFTIMTVEWIVVLFVAYYIDRVLSSGKSPLFFFKNFGKKPSGSLRMPSLRRQGSKVFVNL EKPDVVQEREKVEQLLLEPNTSQAIVCDNLRKVYPGRDGNQAKLAVKGLSLALPRGECFGMLGPNGAGKTSFISMMIGLTKPTSGAAYVEGLDIRTHMEY VYTNMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSVLTRAVEDSLRSLNLFNGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRS CLWNVLKRAKQDRAIILTTHSMEEAEALCDRLGIFVDGGLQCIGNPKELKARYGETYVFTMTTGAENETEVEQMVKELSPSAERTYHLSGTQKFEMPKQE VRIADVFRAVENAKAEFPVFAWGISDTTLEDVFIKVATAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10023612 [exp]	0	1
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	1.7	0.9399
AT1G13480			Protein of unknown function (D...		Lus10031913 [exp]	4.9	0.9177
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	6.9	0.9232
AT4G17900			PLATZ transcription factor fam...		Lus10000482 [exp]	7.2	0.9263
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10014412 [exp]	8.7	0.9196
AT1G47530			MATE efflux family protein (.1...		Lus10002365 [exp]	13.0	0.8982
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	13.9	0.9021
AT1G47530			MATE efflux family protein (.1...		Lus10002367 [exp]	14.9	0.8866
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	16.1	0.9097
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004674 [exp]	19.0	0.9034

Compare expression of checked genes

Lus10023612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.