Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47730 1299 / 0 ABCA2, ATATH1 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) AT5G61730 1195 / 0 ABCA9, ATATH11 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) AT5G61690 1180 / 0 ABCA11, ATATH15 ARABIDOPSIS THALIANA ABC2 HOMOLOG 15, ATP-binding cassette A11, ABC2 homolog 15 (.1) AT3G47790 280 / 4e-80 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT2G41700 278 / 2e-77 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT3G47780 268 / 8e-76 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT5G61700 265 / 7e-75 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT3G47740 263 / 3e-74 ATATH2, ABCA3 A. THALIANA ABC2 HOMOLOG 2, ATP-binding cassette A3, ABC2 homolog 2 (.1) AT3G47770 255 / 2e-71 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1) AT3G47750 249 / 2e-69 ATATH3, ABCA4 ATP-binding cassette A4, ATP binding cassette subfamily A4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024244 [exp] 1889 / 0 AT3G47730 1349 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10004262 [exp] 825 / 0 AT3G47730 840 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10042172 [exp] 413 / 5e-133 AT5G61730 449 / 5e-147 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) Lus10023612 [exp] 265 / 7e-75 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10012755 [exp] 262 / 3e-72 AT2G41700 2655 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10023157 [exp] 193 / 6e-50 AT2G41700 1486 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10029905 [exp] 97 / 2e-20 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 96 / 7e-20 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10039859 [exp] 88 / 2e-17 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069800 [exp] 1339 / 0 AT3G47730 1245 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.015G063500 [exp] 1329 / 0 AT3G47730 1288 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.006G049300 [exp] 290 / 1e-81 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.012G069700 [exp] 270 / 1e-76 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.015G063400 [exp] 270 / 2e-76 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.015G027600 [exp] 100 / 9e-22 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 94 / 2e-19 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 92 / 7e-19 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 90 / 4e-18 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.012G045100 [exp] 88 / 2e-17 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10023613 pacid=23148266 polypeptide=Lus10023613 locus=Lus10023613.g ID=Lus10023613.BGIv1.0 annot-version=v1.0 ATGGAATTGAAGAAGGGAATCCCACTACAGTACCAGCAATTCGAAGCGCTGTTCAGGAAGAATTTCTTGCTCTCATGGAGGAGCAAGCGCGCCACTTTTC TCCAGCTCTTCTCCTCGTTCTTCTTCATACTCCTCCTCTTCTGTATTCAGAAGGCCATGAATTCTTCAGTGGATTACACCACCGCTTACTCCTCCGTCAG GGACCCGCCTACCGCCTTCTATTCGGCGATTCCTCCCTGCGAGGACAAGTTCTTCATCCGCACTCCTTGCTTCGACTTCCTCTGGAGCGGAAATGACAGC GATTCCATTGGCCGGATTGCTCGCGCCATCATGGCTAATAACCCTGGCCGCCCCATTCCTGACGCTAAGGTGAAATCATTCAGGAATACAGATGAGGTGG ATGCATGGCTGCTAGCTAACCCTATCCGTTCCCCTGGCGCTCTGCACTTCACGGAAGTGAGCAATGCAGTAATAAGGTATGGTATTCAGACTAATTCTTC AGCAGCTGCGAGGCGAGGCCGGAACGAAGATCCCACTTTCAAATTTCAAATTCCGCTTCAGATGGCTGCCGAACGTGAAATTGCCCGATTTGTTATTGGA GATCCCAACTTTAGATGGACGGTGGGACTTACAGAATATGCACATCCAGCAGATGACTTCTTCTCAGCATTGGTTGCAGTTGGTCCTGCCTTTTTCCTTG CATTTGCCATGTTTGGATTTGTGTTGCAAATTACTGCTTTGGTTACAGAGAAGGAACTGAAGCTTCGTCAGGCCATGAGCACAATGGGTCTTTATGACTC TGCATATTGGTTATCATGGATCACATGGGAGGGAATCATCGCGCTGTTCTCAGCGCTATTTTTAGTTCTCTTTGGATTGATGTTCCAGTTTGATTTCTTC AAGAAAAACAGTTTTGCAGTTGTGTTTCTGGTGTTCTTTCTGTTTCAAGTCAATATGATTGGTCTCGCCTTCATGATTTCAACCTTCATTAGCAAGGCAT CTTCAGCCACATCGGCAGGATTCTCTTTATTTATCGTCGGGTTTTTCACTCAGGCAAGTTTCCTTTTAGAAATTGTTACCTTATTTGGCTTCCCATATGA CCTTAAAACTTCCAAAGCTCTAAGGAATATCTGGTCAATGTTCCCACCCAATCTTCTTGCTCTAGCCGTGAGACAGCTTGCAGATGCGACTAGTACTCCA GAAGATACTGGAATTACATGGAACAGGAGGACAGATTGTGTAACACGTCAAGATTCCTCAACCTGTGCAATGACAATTAATAAGGTCTACGCATGGCTCC TAGGGACATTTGGTGTCTGGATCCTCTTGGCAATCTACTTTGACAATATATTCCCAAATGCGTATGGTGTGAGAAAACCTTTATTTTACTTCCTAAACCC TGGGTACTGGACTGGGAAAGGTGGAAACAATGTGAAAGAGGGTGGCATCTGTAGCTGCCAGGGTTCAATACCACAAGAGGAACATATCTCTCCAGATGAT GAAGATGTTCTCGAAGAGGAAACAATGGTTAAGAAAGACGCAACAGGAGGCACAATGGACGCAGATGTTGCAGTTCAGATGCGTGGACTTGCAAAGACAT ATGCTGGAACCAGGAAAATCGGTTGCTGTAAATGTCAGAAAACCTCACCTTATCATGCCGTTAGGGGCTTATGGATGAATATAGCCAAGGATCAATTATT TTGTTTACTTGGACCCAATGGAGCTGGGAAAACTACAGCAATCAATTGTTTGACAGGAGTAGCACCAGTGACCAGTGGAGATGCATTGATTTATGGGTAT TCAATTCGAAGTTCTGTTGGCATGTCAAACATTCGCAAATTTATGGGAGTTTGCCCCCAGTTTGACATCCTTTGGGATGCATTATCCGGTCAGGAACACC TTCACCTGTTTGCTACCATTAAGGGCATACCACCAACATCAGTTAAAATGGTTGTCGAGGAACTACTAGGGAAGGTGAAACTTACTGATGCAGCTAGCGT AAGAGCCAGGAGCTATAGTGGAGGAATGAAGCGTCGGCTCAGTGTAGCGATAGCCCTCATTGGTGACCCAAAGATTGTCGTTTTGGATGAACCCACCACA GGCATGGATCCTATATCTAGAAGGCAAGTATGGGATGTAATACAAGAAGCTAAAAGAGGGCGGGCAATTATCTTGACTACACATTCGATGGAAGAAGCTG ATGTCTTAGGGGATCGAATCTCAATCATGGCCAAGGGTAGGCTTAGATGCATTGGAACTTCCATCAGGCTGAAGTCGAGATTTGGGACTGGTTTTGTTAC AAACGTTAGCTTTGGTGAAATGGCTGGTGGTCATAGTCCTATAAATCAACCTGTAGATAGTTCTGCTCGTCATGAGGCAGTGAAACAGTTTTTCAAACAG CATTTGGATGCCACGCCAACAGAGGAGACCAAGTCCTTTATGACTTTTGTCATTCCTCATGACAGGGAGAAGCTTCTCACAAGCGTTTTTGCTGAACTTG AAGATAGACAAACAGAGTTGGGAATAAGTGATATTCAGCTCGGTCTGGCAACTCTAGAAGAAGTGTTCTTAAATATTGCAAGGCAAGCGGAAGTGGAGAG TGCCACAGCTGAGGGGCGTTTTGTTACTCTAAATTTAACTTCTGGAAACTCACTTGAGATACCAGTAGGAATCAGCCTGGTCGGAATCCCAGGTACAGAA TCCAGTGAAAACCCTAGAGGCCTCATGGTTAAAGTGTTCTGGGAGCAAGACGACACAGGTGCCCTTTGTGTATCAGGGCATTCACCTGAAGTGCCTATAC CTCCTGAGGTCCAGCCATCAATGCCTGCAGTTGCAGCCTCAGGAAGCAACTTGTTAGGTAGGAGAGGGCCAGTTTACGGACTTATTATCGATCCCAGTCA GATTCGCTCAGCTGATCCAATATGA
AA sequence Show only first row Show all	>Lus10023613 pacid=23148266 polypeptide=Lus10023613 locus=Lus10023613.g ID=Lus10023613.BGIv1.0 annot-version=v1.0 MELKKGIPLQYQQFEALFRKNFLLSWRSKRATFLQLFSSFFFILLLFCIQKAMNSSVDYTTAYSSVRDPPTAFYSAIPPCEDKFFIRTPCFDFLWSGNDS DSIGRIARAIMANNPGRPIPDAKVKSFRNTDEVDAWLLANPIRSPGALHFTEVSNAVIRYGIQTNSSAAARRGRNEDPTFKFQIPLQMAAEREIARFVIG DPNFRWTVGLTEYAHPADDFFSALVAVGPAFFLAFAMFGFVLQITALVTEKELKLRQAMSTMGLYDSAYWLSWITWEGIIALFSALFLVLFGLMFQFDFF KKNSFAVVFLVFFLFQVNMIGLAFMISTFISKASSATSAGFSLFIVGFFTQASFLLEIVTLFGFPYDLKTSKALRNIWSMFPPNLLALAVRQLADATSTP EDTGITWNRRTDCVTRQDSSTCAMTINKVYAWLLGTFGVWILLAIYFDNIFPNAYGVRKPLFYFLNPGYWTGKGGNNVKEGGICSCQGSIPQEEHISPDD EDVLEEETMVKKDATGGTMDADVAVQMRGLAKTYAGTRKIGCCKCQKTSPYHAVRGLWMNIAKDQLFCLLGPNGAGKTTAINCLTGVAPVTSGDALIYGY SIRSSVGMSNIRKFMGVCPQFDILWDALSGQEHLHLFATIKGIPPTSVKMVVEELLGKVKLTDAASVRARSYSGGMKRRLSVAIALIGDPKIVVLDEPTT GMDPISRRQVWDVIQEAKRGRAIILTTHSMEEADVLGDRISIMAKGRLRCIGTSIRLKSRFGTGFVTNVSFGEMAGGHSPINQPVDSSARHEAVKQFFKQ HLDATPTEETKSFMTFVIPHDREKLLTSVFAELEDRQTELGISDIQLGLATLEEVFLNIARQAEVESATAEGRFVTLNLTSGNSLEIPVGISLVGIPGTE SSENPRGLMVKVFWEQDDTGALCVSGHSPEVPIPPEVQPSMPAVAASGSNLLGRRGPVYGLIIDPSQIRSADPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10023613 [exp]	0	1
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042487 [exp]	5.3	0.8977
AT2G37240			Thioredoxin superfamily protei...		Lus10013051 [exp]	9.2	0.8927
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	12.2	0.8958
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10023275 [exp]	17.5	0.8446
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	17.7	0.8812
AT3G16170		AAE13	acyl activating enzyme 13, AMP...		Lus10035861 [exp]	17.9	0.8172
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	19.4	0.8851
AT1G78780			pathogenesis-related family pr...		Lus10042792 [exp]	20.7	0.8823
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	24.2	0.8793
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10036153 [exp]	25.6	0.8103

Compare expression of checked genes

Lus10023613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.