Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62550 119 / 5e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024245 [exp] 415 / 2e-145 AT5G62550 152 / 8e-42 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063700 [exp] 202 / 3e-62 AT5G62550 157 / 1e-43 unknown protein Potri.016G129250 [exp] 49 / 2e-06 AT5G62550 47 / 3e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023614 pacid=23148254 polypeptide=Lus10023614 locus=Lus10023614.g ID=Lus10023614.BGIv1.0 annot-version=v1.0 ATGAAGAACAGTCGCCATTTGTTTGTAAGAAGTCCCAAGGCAACTGTTGTAGCGCTTAACTTCTTTCCCTTTCAACTTGAAATTTTGAAGAGAAGGCAGG CATCCAGTGTGAGCAAAAGCTTAGGGGTGCTGGATCATTCTGCTAAGGAGAAATCTGTCAAGCCTCCTAGAAGACAGTCCATACCTACCAAGACCATCGT AGGTACTCCATACCCTAAACTGAGCGCGAACATCAAAACAATATCTGAGACTCGAAGTAAGAGGAACGGTAACCAGCTGGGGAAGAGTGAAACACCTCTT TCTGATGCCTCAAGAGCTTCAGTTCGGAGAACTTTCAATAGGATCTCCTCAGCTTCCTACTGGTTGTCACAAATTAAGCTCTCTGAATCTGCAGCCAAAC ACTCAGTTTCTCTTGGCTTCTTCAAACTCGCTCTGGAAGCAGGATGTGAGCCTCTTCAACAAATTCGGGATGAGCTGAAATCTTATGTGCGGCGGTTTGA GCTCGGGGAGCTTGAAGCATCTAAAGAACTGTTCGAGAAGTACAATATTTCTGTGAATCCAGAGCAGCAGGTGCAAGTCTCTGTATCCCATTCTCAGGCA ACTGAAGAGGGATCTCGGTCATCTGAGGAGGATATCAACAGTTCCTCCCCAACAGTAGGAACCATGAATCTGAGGCCCAGGTCGTTAAACACTGCCGCTA CCGACGATGGTGGTAAGAAAGTATCAGTGAAGAAAGAGGCTACCTGGAAGAAGAATGCTCCCTCAACCAAAAGTAAACCAGTGCCTTCACTCTCAAGCAA GGGAACCGTGAACTCTAAGCCTGTTTCAGGGAGTAGTACTAGTAAGGTGCAAAAGAAGCCGCAAAAGCAAATCAAGTCAGAAGCTGGCAAGGTAAAAAAT CAGGTGAAGAAAGCTGGGAAGAAATCTTCAGCTAAAGAAGAAGGCAAGTTTGCAATCAGCCTAGCAGCTGCCGACTCTAGCACAGGGGAGAACAAAGAAA ACATGGATGAAAGGAGGAGCATGGAGGATGTGAGTGTGAGTGAAGTGGTTTAG
AA sequence Show only first row Show all	>Lus10023614 pacid=23148254 polypeptide=Lus10023614 locus=Lus10023614.g ID=Lus10023614.BGIv1.0 annot-version=v1.0 MKNSRHLFVRSPKATVVALNFFPFQLEILKRRQASSVSKSLGVLDHSAKEKSVKPPRRQSIPTKTIVGTPYPKLSANIKTISETRSKRNGNQLGKSETPL SDASRASVRRTFNRISSASYWLSQIKLSESAAKHSVSLGFFKLALEAGCEPLQQIRDELKSYVRRFELGELEASKELFEKYNISVNPEQQVQVSVSHSQA TEEGSRSSEEDINSSSPTVGTMNLRPRSLNTAATDDGGKKVSVKKEATWKKNAPSTKSKPVPSLSSKGTVNSKPVSGSSTSKVQKKPQKQIKSEAGKVKN QVKKAGKKSSAKEEGKFAISLAAADSSTGENKENMDERRSMEDVSVSEVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62550			unknown protein		Lus10023614 [exp]	0	1
AT5G62550			unknown protein		Lus10024245 [exp]	1.0	0.9637
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10006647 [exp]	3.7	0.8992
AT1G23790			Plant protein of unknown funct...		Lus10030619 [exp]	6.0	0.8500
AT2G33400			unknown protein		Lus10011782 [exp]	6.0	0.8680
AT3G54030			Protein kinase protein with te...		Lus10021112 [exp]	7.0	0.8569
AT1G63650	bHLH	EGL1, ATMYC-2, ...	ENHANCER OF GLABRA 3, basic he...		Lus10024631 [exp]	8.4	0.8618
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	8.5	0.8661
AT5G38300			unknown protein		Lus10033566 [exp]	9.5	0.8347
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10025272 [exp]	9.5	0.8571
AT5G58160			actin binding (.1)		Lus10007447 [exp]	13.0	0.8231

Compare expression of checked genes

Lus10023614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.