Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18860 151 / 8e-40 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT1G68150 143 / 1e-37 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT5G15130 145 / 3e-37 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G62300 133 / 3e-33 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G04450 132 / 6e-33 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT4G01720 129 / 4e-32 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT4G22070 129 / 9e-32 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT1G69810 115 / 1e-27 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT4G31800 103 / 4e-24 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT2G25000 99 / 8e-23 WRKY ATWRKY60, WRKY60 WRKY DNA-binding protein 60 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024246 [exp] 604 / 0 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10037205 [exp] 140 / 8e-36 AT5G15130 225 / 2e-67 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10036725 [exp] 140 / 9e-36 AT5G15130 227 / 6e-68 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10015546 [exp] 131 / 1e-33 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10016682 [exp] 132 / 4e-33 AT1G68150 194 / 2e-57 WRKY DNA-binding protein 9 (.1) Lus10021554 [exp] 133 / 7e-33 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10035971 [exp] 130 / 9e-33 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10022959 [exp] 131 / 2e-32 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10035286 [exp] 129 / 1e-31 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G079500 [exp] 201 / 2e-57 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.015G064100 [exp] 194 / 3e-54 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.001G208600 [exp] 142 / 2e-36 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.014G111900 [exp] 132 / 4e-33 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.004G007500 [exp] 132 / 1e-32 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.011G007800 [exp] 130 / 4e-32 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.014G155100 [exp] 130 / 9e-32 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.002G186600 [exp] 127 / 3e-31 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.002G228400 [exp] 126 / 1e-30 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.018G019800 [exp] 102 / 1e-23 AT1G80840 263 / 7e-87 WRKY DNA-binding protein 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10023615 pacid=23148375 polypeptide=Lus10023615 locus=Lus10023615.g ID=Lus10023615.BGIv1.0 annot-version=v1.0 ATGGGAGAGGTGATGGAAGAGAACAGAAGGCTGAAGCTTTACTTGGAACAGATAATGAAGGAATACAAAACACTTGAATCCAAATTCCATGACATAGTTC AACAACAAGAGGAGGAGCATCAGCAGTCCAAGAAATCGACGGATTCTGTCCGAAAGAAGTCACCATTACTAATGTTGGAAGATGGTGATGGTGATGATGA TGATGAACAAGGAGATGAACAGCTGCAGGTATCTCTCAGCCTAGGACGATCACCAAGTCGCGAGCTAAAAAAGATGAACAGCAACAACTTGGAGGAAGTG AAAGGTTCAAGTAGTAGTAGTTTGTCTCTGACGCTTGACTACTCCCGATTCGAAGGAGCTTCGAATATCAACGGGGTGGGGGCAAAGAGGATGAGTCCTT TAAGCAGCAGCTTTGAGGATCGTGATGTAAAGGAAGACGCCACCAAACCATCTCCTTCGAATACGAATGCTAATACGAGTAAGAGGAGTAGTGAAGATGA TGAAGTGTCACAGCAGCAGCAGCAGCAACAGAATCCAGCAGCTAAGAAAGCTCGAGTGTCCGTTCGAGCTAGATGTGACACACCTACGATGAACGATGGG TGTCAATGGAGGAAATATGGACAAAAGATAGCAAAAGGAAATCCATGCCCTAGAGCTTACTACCGCTGCACCGTCGGACCAACCTGCCCTGTTAGGAAAC AGGTACAAAGATGTGCGGAGGACATGTCGATCCTAATAACAACATACGAAGGAAACCACAACCACCCACTCCCAATGTCGGCCACCGCCATGGCTTCCAC CACCTCCGCCGCCGCTTCAATGCTCTTGTCCGCCTCCTCCTCCTCCACCCCGACCACAGCAGCCTCAGCCGCCGCCGCCAATCTCAACGGCATCAACTAC TACATCAACAACTCCGACCCCACCACCAACAACAATCCATCACCATTCTCCTCATCATCAAGATCACTATTCTACTTCCAAACCAATAACAATAACACCT ACATGAACTCCCCATATTCACCTTCCCCAACTTGCCCAACAATCACTCTCGACCTCGCCTCCAATAATAATGACTCTTCCAATAATACCCCCAACAACAT TCTACATTCATCCTTGCCCAGCCGGTTCTCTTCCTTACCCAGATTCCCTCCCACTAGCCTCAACTTCGCCTCTACCGAACCACCGTTCTGGGGCCCCACC ACCACCACTAATAACGGCATCCTCAACTACGGCATTGGTAACACTAGTACTAGTACTAGTACTACTACAACTCAGCTTCCGTATTATAGTACTGGTCGGC TGACGTCAGCAGTGGGTCCGACTTCTTCGGAGGTGGCGGCGGCCACCAAGGCTATTACGGCGGACCCGAGTTTTCAGTCGGCGTTGGCGGCTGCGCTTAC AACAATCATAGGTAATAATGGTAAATCCAACAATTACAGTGGTAATAATAATAGTAGTGGTGGTGGTATGGAGTGGAGATCGTCAGTAGGTGGACAGGCC GGGGCCCACTTATTCCCTGTGGCTAGTAGTAGTGGACTTGGCCGAGCGGCTGACAGTGTCGGGAAAGATAAGAGTAATCGGGCGGCGGCGACGTCGTCGG GGAGGAATGACCAGCCGCTTATGTTTCTACCGTCGTCTTCTTCTAGAAGCGCATCCGCTTCTCCTCCTGACAACAAAGACTGTTGA
AA sequence Show only first row Show all	>Lus10023615 pacid=23148375 polypeptide=Lus10023615 locus=Lus10023615.g ID=Lus10023615.BGIv1.0 annot-version=v1.0 MGEVMEENRRLKLYLEQIMKEYKTLESKFHDIVQQQEEEHQQSKKSTDSVRKKSPLLMLEDGDGDDDDEQGDEQLQVSLSLGRSPSRELKKMNSNNLEEV KGSSSSSLSLTLDYSRFEGASNINGVGAKRMSPLSSSFEDRDVKEDATKPSPSNTNANTSKRSSEDDEVSQQQQQQQNPAAKKARVSVRARCDTPTMNDG CQWRKYGQKIAKGNPCPRAYYRCTVGPTCPVRKQVQRCAEDMSILITTYEGNHNHPLPMSATAMASTTSAAASMLLSASSSSTPTTAASAAAANLNGINY YINNSDPTTNNNPSPFSSSSRSLFYFQTNNNNTYMNSPYSPSPTCPTITLDLASNNNDSSNNTPNNILHSSLPSRFSSLPRFPPTSLNFASTEPPFWGPT TTTNNGILNYGIGNTSTSTSTTTTQLPYYSTGRLTSAVGPTSSEVAAATKAITADPSFQSALAAALTTIIGNNGKSNNYSGNNNSSGGGMEWRSSVGGQA GAHLFPVASSSGLGRAADSVGKDKSNRAAATSSGRNDQPLMFLPSSSSRSASASPPDNKDC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10023615 [exp]	0	1
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	1.0	0.9744
AT1G68400			leucine-rich repeat transmembr...		Lus10040653 [exp]	1.7	0.9418
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	3.7	0.9463
AT5G51500			Plant invertase/pectin methyle...		Lus10031140 [exp]	4.9	0.9244
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	6.9	0.9330
AT5G10820			Major facilitator superfamily ...		Lus10026890 [exp]	7.1	0.9349
					Lus10005397 [exp]	8.4	0.9294
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	10.6	0.9358
AT5G58750			NAD(P)-binding Rossmann-fold s...		Lus10040675 [exp]	10.7	0.9138
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	20.2	0.9209

Compare expression of checked genes

Lus10023615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.