Plant FIBer expression Database

Lus10023616 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18850 432 / 1e-150 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024247
[exp]
739 / 0 AT1G18850 449 / 1e-156 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G064300
[exp]
523 / 0 AT1G18850 447 / 9e-157 unknown protein
PFAM info
Representative CDS sequence
>Lus10023616 pacid=23148310 polypeptide=Lus10023616 locus=Lus10023616.g ID=Lus10023616.BGIv1.0 annot-version=v1.0
ATGTCGTTGTTGGAAGCGATTACAAAGGCTGCAACTAACCCTAAAGATGCTGCGGCAGTATCGGACTACCCAATGATTCTGAACCCTGATGATACTTTGG
CTACTTTGAAGCCTCAGCTTGAAACCCTAGACGCCACTGTGCTTGTCAGTCCTATATCCGGGTGGCAACTCTCCCAAACTGATTCCCAGCTCATTGACCT
GGCCAAGAAGTTTTATTCCAAACTAAAGAGGAAGCGTAAGGACACCAATCGTTTCAGTAAAGACGAGTTCTTTGACATGTTTAAGCCTTTCCTTGAGCAG
ATTAGTGAAAAATCTGGGATCTCTGTAGCTGTTGATTCCTCCGATGATCATTATGTTTCTGCATTGCTCCGGAAGATAGGGGCTCAGGTGGGTCGAGATG
TGGCAGGCTTGGTGTTGGAAGCTTGTCTCAGTTTCGAGATATGGGACATTGTAGAGACCATGATTGTTGATCGGATTGTCGGTTATTCCTCTTATTCAAG
CTTAGTCGAGAGTCTGATTGTGAAAAGGAAGTCTGATCTTCTTTGCTTATGTATAAAACACGCCACTAACCTTGGCCACTCTGAATTGCTCGGTATTATG
AAGTATTTCCTGTGCCCTTCAAAAGATGCCTACGAAAGCATGGCAGATGTCAGGAAAGAATGGGAAAGCCAAGCATTGGCAGCTATCGAGAAAGCAAGTG
ACAAGAGCTTGTCTGAAAAGAGGTCGAGCCTGGCGAAAGAGGCTGCAGTTTTGCTTATGGTTGCTCATGATGGCTTCTCAACTTCTGAACTCTGTCTGCA
TTACTTGTTAGCCTCGTCAAATATTGATGAAGTAGTTATGTCATCGGCGATTGGGAAGCTGAGTGGTAGGGAGATGATGAGCTTGATAAGGTACTTGGGG
AAATGGTTGAACAAGTATGAAAGATTTGCTCAGGCGGTACCTTGCCCGAAAGCTTCTAGTACATTCGGGTTAAAGGCTTGTGATTGGGTTCCTAAAGTCG
AGGATATCGCCAGATGTTTTGGGTTGGTAGTGGATGAAAACTTCTCCACTTTGATATTGCACACAGAGTTTCATGAAGAGCTGAAAAGGATAATGGGGTA
TGTTGGTTCTCTTGCCTCTGAAGCTTCACTCTGTTGTTCTGTTGCGAATGTGATCGACGGTTTAAGAAGTGAAACTAAAGGTGAGCAAAATTAG
AA sequence
>Lus10023616 pacid=23148310 polypeptide=Lus10023616 locus=Lus10023616.g ID=Lus10023616.BGIv1.0 annot-version=v1.0
MSLLEAITKAATNPKDAAAVSDYPMILNPDDTLATLKPQLETLDATVLVSPISGWQLSQTDSQLIDLAKKFYSKLKRKRKDTNRFSKDEFFDMFKPFLEQ
ISEKSGISVAVDSSDDHYVSALLRKIGAQVGRDVAGLVLEACLSFEIWDIVETMIVDRIVGYSSYSSLVESLIVKRKSDLLCLCIKHATNLGHSELLGIM
KYFLCPSKDAYESMADVRKEWESQALAAIEKASDKSLSEKRSSLAKEAAVLLMVAHDGFSTSELCLHYLLASSNIDEVVMSSAIGKLSGREMMSLIRYLG
KWLNKYERFAQAVPCPKASSTFGLKACDWVPKVEDIARCFGLVVDENFSTLILHTEFHEELKRIMGYVGSLASEASLCCSVANVIDGLRSETKGEQN

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G18850 unknown protein Lus10023616
[exp]
0 1
AT1G55205 unknown protein Lus10032319
[exp]
1.0 0.8662
AT4G17520 Hyaluronan / mRNA binding fami... Lus10004362
[exp]
2.4 0.8005
AT3G13682 LDL2 LSD1-like2 (.1) Lus10037885
[exp]
3.3 0.7688
AT5G65260 RNA-binding (RRM/RBD/RNP motif... Lus10043008
[exp]
4.9 0.7732
AT4G18100 Ribosomal protein L32e (.1) Lus10031699
[exp]
5.7 0.8112
AT1G55040 zinc finger (Ran-binding) fami... Lus10031502
[exp]
5.7 0.7604
AT3G13230 RNA-binding KH domain-containi... Lus10008345
[exp]
6.0 0.7783
AT1G55205 unknown protein Lus10024700
[exp]
9.4 0.7898
AT3G26750 unknown protein Lus10021459
[exp]
10.0 0.7563
AT2G03870 EMB2816 EMBRYO DEFECTIVE 2816, Small n... Lus10035639
[exp]
10.9 0.7745

Lus10023616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.