Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05810 156 / 1e-44 ATL43 RING/U-box superfamily protein (.1) AT2G20030 133 / 1e-35 RING/U-box superfamily protein (.1) AT4G28890 128 / 3e-33 RING/U-box superfamily protein (.1) AT4G30400 102 / 8e-24 RING/U-box superfamily protein (.1) AT4G40070 100 / 9e-24 RING/U-box superfamily protein (.1) AT3G05200 100 / 3e-23 ATL6 RING/U-box superfamily protein (.1) AT2G18650 100 / 3e-23 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT3G16720 98 / 3e-23 ATL2 TOXICOS EN LEVADURA 2 (.1) AT1G23980 99 / 5e-23 RING/U-box superfamily protein (.1) AT1G72200 99 / 7e-23 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024248 [exp] 139 / 3e-41 AT5G05810 50 / 1e-08 RING/U-box superfamily protein (.1) Lus10034953 [exp] 133 / 2e-35 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10012975 [exp] 132 / 6e-35 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10009511 [exp] 122 / 4e-31 AT2G20030 228 / 3e-71 RING/U-box superfamily protein (.1) Lus10011702 [exp] 121 / 6e-31 AT4G28890 231 / 1e-71 RING/U-box superfamily protein (.1) Lus10000333 [exp] 103 / 1e-24 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10012745 [exp] 102 / 1e-24 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10031515 [exp] 101 / 3e-24 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10041134 [exp] 102 / 5e-24 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G056800 [exp] 161 / 1e-45 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 139 / 3e-37 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 128 / 2e-33 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 127 / 3e-33 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 101 / 8e-24 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 102 / 9e-24 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 100 / 3e-23 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.018G098500 [exp] 100 / 3e-23 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 98 / 9e-23 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 97 / 2e-22 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10023617 pacid=23148342 polypeptide=Lus10023617 locus=Lus10023617.g ID=Lus10023617.BGIv1.0 annot-version=v1.0 ATGCTCCACCACCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNCGACCACACCCCCCCCCCACCAGACCCACCCCCGCCTACAACACCAACGCCAACGGCG GTGACGCCGGCCTCCTCAGGAAAAACTCCGGCGTCGATAGATCGGTTGTCGAGTCTCTTCCCCTTTTCCGGTTCAGCTCCCTCAGGGGACAAAAAGACGG CCTTGAATGCGCCGTCTGCCTCAATCGATTCGAGAATCCTGAGGTCCTCCGCCTCCTCCCTAAATGCCGCCACGCTTTCCACGTCGATTGCGTCGATACT TGGCTCGACGCCCATTCCACCTGCCCTCTCTGCCGCCACCGCGTCCACCCGGAGGACGTCCTCATCGTCATTGAGCACGACGAAAACGACGTCGAACAAC GCTCCGCCTCCTCCCAGGTCGAAAACGACTCTGTATCCGGATCCCCCGTAATTCCAATTGAATCGCCCCCCAAAGATCCTCCTCCGAATTCGACTGACGT TGAATCCGGCAAACCGCCCCCGCCCGCCGCCGCTTCCGCCTCTGAAGAGGGATCTAGGCGAGTGGCTGGGAGGCATTCGTCGGCGGGGGAGAGGGCCAGT GGAGGCGGCGGATTGTTCTCGCAGATTTTTTTCTCAGCGCACAGGAAGAGCGCATTCTCCCAAAGTTCTACTCCGTTTAGGAAGACGAGTTTGGAGAAAT CGAGTTCGAGGAAGAAGAGAGGGAGCGCGGATAATAGAGCAGCAGCAGTCACCGTCGGATGTTTCGATCGTTACCAACGGAAAGATGGGCTGCTCTTGAC CCGTTCGGAAAGTGGATGGGGCTCCGTTTCACTTTCAACTATTGACAGGACCCGTTTGGAGCATCGGATAATCGTATCGGACGGCCGGCAATACCAAACC CATAGGTGGAGCGACGTACAGCCGTCGGATCGTCTCTATCTACGGTCGGAATTGATCATCAGTAATAGCCGTGGAGTACATTCAGAACGGAAGCCGCCTC TGCCTCCTTTCCCTCCGCCGCGGCTTCCTCCGTCACAAGTACAAACTACTTCATAG
AA sequence Show only first row Show all	>Lus10023617 pacid=23148342 polypeptide=Lus10023617 locus=Lus10023617.g ID=Lus10023617.BGIv1.0 annot-version=v1.0 MLHHPXXXXXXXXXRPHPPPTRPTPAYNTNANGGDAGLLRKNSGVDRSVVESLPLFRFSSLRGQKDGLECAVCLNRFENPEVLRLLPKCRHAFHVDCVDT WLDAHSTCPLCRHRVHPEDVLIVIEHDENDVEQRSASSQVENDSVSGSPVIPIESPPKDPPPNSTDVESGKPPPPAAASASEEGSRRVAGRHSSAGERAS GGGGLFSQIFFSAHRKSAFSQSSTPFRKTSLEKSSSRKKRGSADNRAAAVTVGCFDRYQRKDGLLLTRSESGWGSVSLSTIDRTRLEHRIIVSDGRQYQT HRWSDVQPSDRLYLRSELIISNSRGVHSERKPPLPPFPPPRLPPSQVQTTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10023617 [exp]	0	1
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Lus10002193 [exp]	4.1	0.8120
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	6.9	0.7879
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026927 [exp]	8.7	0.7962
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	9.2	0.7764
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10022645 [exp]	10.4	0.7997
AT1G11050			Protein kinase superfamily pro...		Lus10029714 [exp]	12.6	0.7714
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10019044 [exp]	18.0	0.7872
					Lus10025138 [exp]	18.9	0.7304
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10004454 [exp]	28.1	0.7408
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	29.3	0.7407

Compare expression of checked genes

Lus10023617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.