Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74700 438 / 2e-156 NUZ, TRZ1 tRNAse Z1 (.1) AT2G04530 305 / 4e-103 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024249 [exp] 597 / 0 AT1G74700 433 / 1e-154 tRNAse Z1 (.1) Lus10014623 [exp] 328 / 7e-112 AT2G04530 543 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10033809 [exp] 327 / 2e-111 AT2G04530 540 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G064400 [exp] 466 / 5e-167 AT1G74700 462 / 4e-166 tRNAse Z1 (.1) Potri.014G160600 [exp] 334 / 3e-114 AT2G04530 528 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.010G106200 [exp] 42 / 0.0003 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023618 pacid=23148371 polypeptide=Lus10023618 locus=Lus10023618.g ID=Lus10023618.BGIv1.0 annot-version=v1.0 ATGGAAGAAAACACCAGTTTCAGCTCTGATTCAACGCTCAGACTTGCTGATTCAGCGCCGACCAACAAGAAAGTGAAGAAGAAGCCAGCGATGAGTATAG AAGGATACCCCATTGAGGGATTGTCGATTGCAGGCCTGGAAACTTGCATAATATTCCCTTCGATGAACTTGGCTTTCGATATCGGCCGGTGCCCTCAACG AGCAATCTCTCAAGACTTCCTTTTCATCTCCCATGCTCACATGGATCACATTGGAGGGTTGCCAATGTATGTTGCTACCCGTGGCCTAAACCGAATGAAG CCTCCGACCATCATTGTGCCGACCTGCATCAAAGAAACGGTTGAAAAGCTTTTTGATGTGCATCGAGAGTTGGATGGATCAGAGCTTAAGCATAAACTTG TTGGTTTAGATGTAGGGGAGGAGATTTACATAAGACGGGACCTTAAAGTCAAAGCATTCAGGACATACCATAGAGTAAGGAGCCAGGGTTATATCCTCTA CCAAGTAAAAGAAAAACTTAAACAAGAATATCATGGCTTATCGAGCAATGAGATAAAGAACTTGAAGTTATCGGGTGTAAAGATAACAGACACTACGACT CACCCAGAGATTGCTTTTACGGGTGACACAATGTCTGACTTTATTATGGATGAGAGTAATATTGACGTTCTGAAGGCAAAGATTCTTGTTATGGAGTGTA CTTTTGTTGAGGACAGGGTAACGGTGGAGCATGCCCGAGAATATGGTCATACACATCTCTTCGAGATAATCAAGCACGCAGACAAATTTCAGAACAAAGC GATCCTTATGATCCATTTTTCAGCTCGATACACTGTAGAGGAGATTGAAGAAGCATTATCAAAACTGGAAGCACCTTTGGCTGGTCGAGTTTCTGCACTC TTAGAAGGTATATGA
AA sequence Show only first row Show all	>Lus10023618 pacid=23148371 polypeptide=Lus10023618 locus=Lus10023618.g ID=Lus10023618.BGIv1.0 annot-version=v1.0 MEENTSFSSDSTLRLADSAPTNKKVKKKPAMSIEGYPIEGLSIAGLETCIIFPSMNLAFDIGRCPQRAISQDFLFISHAHMDHIGGLPMYVATRGLNRMK PPTIIVPTCIKETVEKLFDVHRELDGSELKHKLVGLDVGEEIYIRRDLKVKAFRTYHRVRSQGYILYQVKEKLKQEYHGLSSNEIKNLKLSGVKITDTTT HPEIAFTGDTMSDFIMDESNIDVLKAKILVMECTFVEDRVTVEHAREYGHTHLFEIIKHADKFQNKAILMIHFSARYTVEEIEEALSKLEAPLAGRVSAL LEGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Lus10023618 [exp]	0	1
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	8.8	0.8048
AT4G37280			MRG family protein (.1)		Lus10011511 [exp]	11.2	0.7754
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	14.7	0.7723
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10019873 [exp]	17.2	0.7532
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	17.2	0.7443
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	19.2	0.7668
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	25.1	0.7623
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	27.3	0.7543
AT4G32790			Exostosin family protein (.1)		Lus10011120 [exp]	27.5	0.6750
AT5G04520			Protein of unknown function DU...		Lus10017450 [exp]	28.5	0.7215

Compare expression of checked genes

Lus10023618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.