Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14660 267 / 2e-92 NRPE7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT3G22900 209 / 2e-69 NRPD7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT4G14520 100 / 2e-26 DNA-directed RNA polymerase II-related (.1.2.3) AT5G59180 69 / 1e-14 NRPB7 DNA-directed RNA polymerase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024250 [exp] 355 / 2e-127 AT4G14660 263 / 5e-91 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10023620 [exp] 259 / 3e-89 AT4G14660 205 / 3e-68 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10024251 [exp] 141 / 1e-43 AT4G14660 117 / 1e-34 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10004986 [exp] 71 / 3e-15 AT5G59180 325 / 2e-115 DNA-directed RNA polymerase II (.1) Lus10001559 [exp] 70 / 4e-15 AT5G59180 331 / 5e-118 DNA-directed RNA polymerase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161700 [exp] 290 / 7e-102 AT4G14660 293 / 5e-103 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.010G077300 [exp] 281 / 3e-98 AT4G14660 261 / 3e-90 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.010G077200 [exp] 164 / 6e-52 AT4G14660 171 / 1e-54 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.001G377200 [exp] 71 / 1e-15 AT5G59180 340 / 1e-121 DNA-directed RNA polymerase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF03876 [flax] [poplar] SHS2_Rpb7-N SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
Representative CDS sequence Show only first row Show all	>Lus10023619 pacid=23148291 polypeptide=Lus10023619 locus=Lus10023619.g ID=Lus10023619.BGIv1.0 annot-version=v1.0 ATGTTTCTGAAAGTGAAGCTGCCTTGGAATGTGATAATTCCAGCTGATTCCCTGGACGCCAAAGGACTCATACTTCAAAGGGCAATCATGATAAAGCTGC TGGAAGAATTTGCGAGAAGGCGCTCCGACAAAGATCTTGGATACCACATCGCTCTCACAACTGTGGATCACATCGGGGAGGGACAGGTGAGGCAGCACAC GGGGGAAGTGCTGTTTCCTGTGGTATTCAGTGCCATCACATTCAAGATCTTCAGGGGAGAAGTTCTGGAGGGAGTGGTGCACAAGGTCTTCAAGCACGGG GTCTTCTTGCGGTGTGGACCGATTGAGAATGCCTACCTCTCGTGCACGAAGATGCCAGGATACCACTACGTCCCTGGAGAGAACCCGGAGTTTATCAACG AGAAGATGCCCAAAATTGGGAACGATGTGGTGGTTCGGTTCATGGTGATCGGGACCAAGTGGCTAGAGGCTGAGAGGGAGTTCCAGGCACTGGTTGGCTT GGAGGGCGATTTTCTAGGTCCGGTCTCCCGTAATCCCTCTATGTGA
AA sequence Show only first row Show all	>Lus10023619 pacid=23148291 polypeptide=Lus10023619 locus=Lus10023619.g ID=Lus10023619.BGIv1.0 annot-version=v1.0 MFLKVKLPWNVIIPADSLDAKGLILQRAIMIKLLEEFARRRSDKDLGYHIALTTVDHIGEGQVRQHTGEVLFPVVFSAITFKIFRGEVLEGVVHKVFKHG VFLRCGPIENAYLSCTKMPGYHYVPGENPEFINEKMPKIGNDVVVRFMVIGTKWLEAEREFQALVGLEGDFLGPVSRNPSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023619 [exp]	0	1
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031700 [exp]	2.0	0.8383
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Lus10031394 [exp]	4.6	0.7944
AT5G27440			unknown protein		Lus10041604 [exp]	5.5	0.7735
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011770 [exp]	5.5	0.8270
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10014277 [exp]	7.4	0.7886
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10021244 [exp]	8.7	0.7487
AT1G54850			HSP20-like chaperones superfam...		Lus10035725 [exp]	10.9	0.7711
AT2G39170			unknown protein		Lus10018298 [exp]	12.8	0.6903
AT2G04280			unknown protein		Lus10036415 [exp]	12.8	0.7905
AT2G41600			Mitochondrial glycoprotein fam...		Lus10042041 [exp]	20.0	0.6955

Compare expression of checked genes

Lus10023619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.