Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14660 192 / 3e-63 NRPE7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT3G22900 149 / 3e-46 NRPD7 RNA polymerase Rpb7-like, N-terminal domain (.1) AT4G14520 86 / 3e-21 DNA-directed RNA polymerase II-related (.1.2.3) AT5G59180 63 / 1e-12 NRPB7 DNA-directed RNA polymerase II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023619 [exp] 241 / 3e-82 AT4G14660 266 / 2e-92 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10024250 [exp] 238 / 7e-81 AT4G14660 263 / 5e-91 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10024251 [exp] 131 / 6e-40 AT4G14660 117 / 1e-34 RNA polymerase Rpb7-like, N-terminal domain (.1) Lus10001559 [exp] 64 / 9e-13 AT5G59180 331 / 5e-118 DNA-directed RNA polymerase II (.1) Lus10004986 [exp] 62 / 3e-12 AT5G59180 325 / 2e-115 DNA-directed RNA polymerase II (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G161700 [exp] 213 / 2e-71 AT4G14660 293 / 5e-103 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.010G077300 [exp] 201 / 1e-66 AT4G14660 261 / 3e-90 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.010G077200 [exp] 140 / 1e-42 AT4G14660 171 / 1e-54 RNA polymerase Rpb7-like, N-terminal domain (.1) Potri.001G377200 [exp] 66 / 7e-14 AT5G59180 340 / 1e-121 DNA-directed RNA polymerase II (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [flax] [poplar] SHS2 PF03876 [flax] [poplar] SHS2_Rpb7-N SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
Representative CDS sequence Show only first row Show all	>Lus10023620 pacid=23148380 polypeptide=Lus10023620 locus=Lus10023620.g ID=Lus10023620.BGIv1.0 annot-version=v1.0 ATGTATCTGAAAGTGCAGTTGGCTTGGAATGTGATAATCCCACCTGATTGCCTGGATGAAAAAGGTATCAAACTTCAAAGGGAAATCATGATAAAGCTGC TGGACGAAATTGCGAGAAGACGAACCAGCAAAGACTATGGATACTACATCGCACTCACAAAAATCGACAACATTGGGGAGGGAATGATCAGGGTGCACAC AGGTGAAGTGATGTTCCGTGTCGAATTCGGTGCCATCACGTTCACCGCCTTCAGGGGAGAAGTGATGAAGGGAGTTGTGCAGAAGGTGTGGGAGCATGGG GTGGTCTTGAGGTGTGGACCGATCGAGAATGTGTTCCTCTCTTGCAAGAAAATGCCTGGATACAGCTATGTCGATGGAGAGAATCCGGAGTTTGTGAATG AGAAGATGCCAAAAATTGGGAGGGACGTGGTGGTTCGGTTCGCGGTGATGGAGACTATGTGGCTTGAGGAGGAGATGGAGCTGCAGGTACTGGCTACCTT GGAAGGTGAATTTCTAGGTCCGCAGTGTTGA
AA sequence Show only first row Show all	>Lus10023620 pacid=23148380 polypeptide=Lus10023620 locus=Lus10023620.g ID=Lus10023620.BGIv1.0 annot-version=v1.0 MYLKVQLAWNVIIPPDCLDEKGIKLQREIMIKLLDEIARRRTSKDYGYYIALTKIDNIGEGMIRVHTGEVMFRVEFGAITFTAFRGEVMKGVVQKVWEHG VVLRCGPIENVFLSCKKMPGYSYVDGENPEFVNEKMPKIGRDVVVRFAVMETMWLEEEMELQVLATLEGEFLGPQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023620 [exp]	0	1
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012818 [exp]	8.8	0.7657
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009138 [exp]	9.3	0.8195
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10005865 [exp]	14.9	0.8055
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016669 [exp]	18.2	0.7872
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10024259 [exp]	18.2	0.6739
					Lus10022643 [exp]	22.6	0.7834
AT2G27550		ATC	centroradialis (.1)		Lus10019518 [exp]	29.4	0.7201
AT5G23660		MTN3, SWEET12, ...	homolog of Medicago truncatula...		Lus10009782 [exp]	30.2	0.7820
AT1G13620		RGF2	root meristem growth factor 2,...		Lus10019202 [exp]	33.0	0.7674
AT5G15230		GASA4	GAST1 protein homolog 4 (.1.2)		Lus10030680 [exp]	49.1	0.7505

Compare expression of checked genes

Lus10023620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.