Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18870 623 / 0 ATICS2, ICS2 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2) AT1G74710 623 / 0 ATICS1, SID2, EDS16, ICS1 SALICYLIC ACID INDUCTION DEFICIENT 2, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, ADC synthase superfamily protein (.1.2) AT1G68890 116 / 8e-27 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1) AT2G29690 76 / 3e-14 ATHANSYNAB, ASA2 anthranilate synthase 2 (.1) AT5G05730 64 / 1e-10 JDL1, WEI2, TRP5, AMT1, ASA1 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) AT3G55870 62 / 5e-10 ADC synthase superfamily protein (.1) AT2G28880 53 / 5e-07 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024255 [exp] 716 / 0 AT1G18870 459 / 2e-158 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2) Lus10024254 [exp] 150 / 2e-42 ND / Lus10030915 [exp] 95 / 8e-20 AT1G68890 1693 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1) Lus10014830 [exp] 66 / 4e-11 AT2G29690 875 / 0.0 anthranilate synthase 2 (.1) Lus10041403 [exp] 66 / 5e-11 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10036525 [exp] 65 / 2e-10 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10009888 [exp] 64 / 2e-10 AT5G05730 755 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Lus10016945 [exp] 64 / 2e-10 AT2G29690 872 / 0.0 anthranilate synthase 2 (.1) Lus10014842 [exp] 64 / 3e-10 AT5G05730 864 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G070000 [exp] 734 / 0 AT1G18870 628 / 0.0 ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, isochorismate synthase 2 (.1.2) Potri.010G135500 [exp] 115 / 1e-26 AT1G68890 1931 / 0.0 magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases (.1) Potri.010G190600 [exp] 67 / 2e-11 AT5G05730 835 / 0.0 WEAK ETHYLENE INSENSITIVE 2, TRYPTOPHAN BIOSYNTHESIS 5, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, A-METHYL TRYPTOPHAN RESISTANT 1, anthranilate synthase alpha subunit 1 (.1.2) Potri.010G221500 [exp] 66 / 5e-11 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.009G044300 [exp] 61 / 1e-09 AT2G29690 808 / 0.0 anthranilate synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00425 [flax] [poplar] Chorismate_bind chorismate binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10023622 pacid=23148382 polypeptide=Lus10023622 locus=Lus10023622.g ID=Lus10023622.BGIv1.0 annot-version=v1.0 ATGGAAGCTGGAAGAGTAGGAGGAGTAGTCCAGCATTCACCACGTCTCTCAGCAGCTATCAAGTGCAGCAGCTCCAGAGTATCCGCCTACCCTGTTTTCC GGCCGAGTCCGATGGTTCACTTTTCCCGCCGCCGCCACGTAAGATTAAAAATCTATTCTAATTCGCAGTCCATGAACGGGTGCCTGCTGCAGAACTTGGA CGCCGCCGGCCCAGTAGCTTTCATCGAAAGTCGGACACTTGCGGCAGTTACATCTGCTGCATTGGCCATGGACGCCCTCAACTCCGCCGTCTATGGATTG GAATCCAATCCCCCGCGTGCTTCTTCTGGCATCATACGCTTGCAGGTCTCAATCGAAGAGAAAATTGAAGCAATCGACTGGCTTCATGCCCAAACCCACC TTCTTCCCCGCTGTTTCTTCTCCGGAAGAAACCATGGACACAGCAGCACTGACCTTCACATCCACTCCGCCAATGGAAATGGAAACAGCCGTCCATTAAA TCGAAACCTCGCCAGTGTAGCTGGCATTGGCTCTGCCGTTCTCTTCAGACATTCGCGCCCTTTCTCCTACAACGACTGGAAATCCATCAAAAGGTTCCTC CCAGCCGAATGCCCGCTGATTCGAGCTTATGGTGCCATCCGATTCGACGCAGCTTCCAACGTATCGTCTGAATGGGAGGCCTTTGGCTCCTTTTACTTCA TCATCCCTCAGGTTGAGTTGGACGAGCTTGAGGGAAGTTCGATGCTTGCTGCAACAATCGCTTGGGATAATGACCTCTCCTGGCCGTGGGAAAAAGCCAT TCATTCTCTCAGAACTACAATGGATCAGATATCATCTTTCATTGTTAAGTTGAGGAAAGAAGTAGCCAGGACTTACATTTTGAGAAATGATCACTCTCCT ATTAAGCCAAAGTGGGATAATGCTGTTAATAGAGCTCTTAATATGATCAGCAGAACAACTTCACCACTCCTAAAGGTTGTTCTTGCTCGCAGCAGCAGGG TTGTTACTATGTCCGATATTGATCCTATAACCTGGCTGGCTTGTCTTCAGGAGGAAGGCCAAGACGCTTTCCAGTTCTGTCTTCAGCCACCTGATGCACC GGCTTTTATAGGCAACACGCCAGAGCAACTATTCCATAGAAAAGGGCTGCGGATCGAAAGTGAAGCTTTGGCAGGAACTCGAGCTAGAGGTGGATCGGCT GCTCTAGATCTACAGATAGAACTAGATTTGCTTTCAAGTCCAAAGGACCACCTTGAGTTCACAATAGTGCGAGATAGCATACTGAGAAAACTAGAGGCAA GTGGCTCAGCAGTATGCAGCGGAGTCGTAATCGAACCAAGTAAAGCAATTAGAAAGTTAGCAAGAGTCCAACATCTGTATGCCAAACTGGCAGGCAAGTT AGGAAGTGAAGATGATGAGTTCGACATCTTGTCTGCACTCCACCCAACACCAGCAGTCTGTGGATTCCCAGCAGAGGACGCAAGGTCTCTGATCACGGAA ACTGAGATATTCGATCGAGGGATGTATGCTGGACCCGTAGGATGGTTTGGAGGAGGAGAAAGTGAGTTTGCTGTTGGCATAAGATCTGCCTTGGTTAAAA AGGGCCTCGACGTGCTGATCTATGCCGGTACTGGTATTGTGGAAGGAAGCGATCCATCTCTGGAATGGGATGAATTGGAACTGAAGACATCACAGTTCAC CAAGTTACTAAGGCTAGAGGTCCCATCCAGAGCAACGGTTACAAACTTGGGAAGAATCACCCTTTCGGAGCATTTACAGTAA
AA sequence Show only first row Show all	>Lus10023622 pacid=23148382 polypeptide=Lus10023622 locus=Lus10023622.g ID=Lus10023622.BGIv1.0 annot-version=v1.0 MEAGRVGGVVQHSPRLSAAIKCSSSRVSAYPVFRPSPMVHFSRRRHVRLKIYSNSQSMNGCLLQNLDAAGPVAFIESRTLAAVTSAALAMDALNSAVYGL ESNPPRASSGIIRLQVSIEEKIEAIDWLHAQTHLLPRCFFSGRNHGHSSTDLHIHSANGNGNSRPLNRNLASVAGIGSAVLFRHSRPFSYNDWKSIKRFL PAECPLIRAYGAIRFDAASNVSSEWEAFGSFYFIIPQVELDELEGSSMLAATIAWDNDLSWPWEKAIHSLRTTMDQISSFIVKLRKEVARTYILRNDHSP IKPKWDNAVNRALNMISRTTSPLLKVVLARSSRVVTMSDIDPITWLACLQEEGQDAFQFCLQPPDAPAFIGNTPEQLFHRKGLRIESEALAGTRARGGSA ALDLQIELDLLSSPKDHLEFTIVRDSILRKLEASGSAVCSGVVIEPSKAIRKLARVQHLYAKLAGKLGSEDDEFDILSALHPTPAVCGFPAEDARSLITE TEIFDRGMYAGPVGWFGGGESEFAVGIRSALVKKGLDVLIYAGTGIVEGSDPSLEWDELELKTSQFTKLLRLEVPSRATVTNLGRITLSEHLQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74710		ATICS1, SID2, E...	SALICYLIC ACID INDUCTION DEFIC...		Lus10023622 [exp]	0	1
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10033987 [exp]	2.4	0.8912
AT2G44590		ADL1D	DYNAMIN-like 1D (.1.2.3)		Lus10030928 [exp]	3.7	0.8826
AT1G08980		ATTOC64-I, ATAM...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10029941 [exp]	4.7	0.9110
AT1G03160		FZL	FZO-like (.1.2)		Lus10000656 [exp]	5.3	0.8919
AT3G10540			3-phosphoinositide-dependent p...		Lus10037921 [exp]	7.3	0.8890
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Lus10042381 [exp]	9.2	0.8763
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	9.5	0.8961
AT2G05310			unknown protein		Lus10001175 [exp]	9.6	0.8966
AT5G27560			Domain of unknown function (DU...		Lus10004486 [exp]	13.0	0.8886
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003674 [exp]	15.2	0.8886

Compare expression of checked genes

Lus10023622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.