Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01270 495 / 8e-174 Pectate lyase family protein (.1) AT1G14420 484 / 6e-170 AT59 Pectate lyase family protein (.1) AT5G15110 481 / 2e-168 Pectate lyase family protein (.1) AT2G02720 470 / 3e-164 Pectate lyase family protein (.1) AT4G13710 431 / 9e-149 Pectin lyase-like superfamily protein (.1.2) AT3G07010 421 / 1e-145 Pectin lyase-like superfamily protein (.1) AT1G04680 410 / 4e-141 Pectin lyase-like superfamily protein (.1) AT3G24670 410 / 5e-141 Pectin lyase-like superfamily protein (.1) AT3G24230 410 / 6e-141 Pectate lyase family protein (.1) AT5G63180 404 / 1e-138 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036721 [exp] 518 / 0 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10037207 [exp] 517 / 0 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10030791 [exp] 505 / 3e-178 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10005254 [exp] 469 / 1e-163 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10033018 [exp] 457 / 1e-158 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10030670 [exp] 445 / 3e-154 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10038157 [exp] 420 / 1e-144 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 417 / 7e-144 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 417 / 9e-144 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G064700 [exp] 560 / 0 AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) Potri.008G148800 [exp] 540 / 0 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.004G124100 [exp] 481 / 4e-168 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.017G078400 [exp] 468 / 3e-163 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.003G175900 [exp] 425 / 1e-146 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 422 / 2e-145 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 413 / 6e-142 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 411 / 3e-141 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.015G087800 [exp] 404 / 7e-139 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 401 / 5e-138 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase CL0268 [flax] [poplar] PF04431 [flax] [poplar] Pec_lyase_N Pectate lyase, N terminus
Representative CDS sequence Show only first row Show all	>Lus10023623 pacid=23148305 polypeptide=Lus10023623 locus=Lus10023623.g ID=Lus10023623.BGIv1.0 annot-version=v1.0 ATGGGAGAATCGTCAGTTGTGTTGATCGTTTTTGTAGTGTTAACATCTATATGGAGTTTGGTAATTTCGGTCGCCGGTGATGATCATGAGTACTGGCGAC GGCGAGCTTTGGAGGCCCATGACAGAGCTAAAGCAGCCTACCATCCCGATCCTCTCCAAGTCGTCGACCATCTCAACCTCCAAGTTCACAAGGCATTAGG GGATGACAGCGACAACAACAGTACGAGGAGAGAGCTACGCAATAAGAAAGTAGAAGGGCCGTGCGAGGCCCTCAATCCCATCGACCGGTGCTGGCGATGC GACAAAAACTGGGCCAAAAACCGCAAGAAGCTCGCCGACTGCGCCCTCGGCTTCGGCCGCGGCACCACCGGCGGTAAGGCCGGCGAATTTTATGTCGTCA CCGACGCCTCCGATTCCGACACTGTCCACCCTAAACCGGGAACTCTCCGCCACGCCGTGGTCCAGAACCGGCCTCTCTGGATCACCTTCGCGCACTCAAT GATCATAACCCTCTCCCAGGAGCTCCTAATTAACTCCAACAAGACCATCGACGCCCGCGGCGCCAACGTCCGAATCGCCTACGGCGGCCAACTAACCCTC CAATTCGTCGACAACGTCATCATCCACAGCCTCCATGTCCACGACATCGTCCCCAGAAGCGGCGGCGACATCCGCTCCTCCGCTGACCACTTCGGGCACC GATCCTGCTCCGACGGTGACGGGATCTCCCTCTTCGGCGCCACTAATATCTGGCTTGACCACATCTCGATGTCCAATTGCGCCGACGGGCTCATCGACGT CATCGTGAAGTCCACTGCCATCACAATCTCCAATTCCCACTTCACCAAGCATAATGACGTCATGCTGGTGGGTGCCAGCGATACCGAAACCGGGGATAAG GTGATTCAGCTCACTTTAGCTTTCAATCATTTTGGCCGGGGTTTGGTCCAGAGGATGCCCAGGCTCCGATGGGGTTTCGCTCATGTTGTCAATAATGACT ATACTCATTGGGAGATGTATGCCATTGGTGGCAATTTCAACCCCACCATTCTAAGCCAGGGCAATCGCTTTGTTGCCCCTCCTAATCATGCTTCCAAAGA GGTGACGAAAAGGGAATACACTGAAGAAGGTGTGTGGAAGTCATGGATTTGGAAATCAGAGCAAGATCTGTTGGAGAATGGGGCGTTCTTCATCCAATCA GGGGGCCATATGCGTCCCACGAACAGCAAGGACGTGATCAGCGCCAGGCATGGATCGCACGTCAGCAGATTAACGCGGTGTTCAGGTGCGCTCGACTGCT TCGTTAATAAACCATGTTAA
AA sequence Show only first row Show all	>Lus10023623 pacid=23148305 polypeptide=Lus10023623 locus=Lus10023623.g ID=Lus10023623.BGIv1.0 annot-version=v1.0 MGESSVVLIVFVVLTSIWSLVISVAGDDHEYWRRRALEAHDRAKAAYHPDPLQVVDHLNLQVHKALGDDSDNNSTRRELRNKKVEGPCEALNPIDRCWRC DKNWAKNRKKLADCALGFGRGTTGGKAGEFYVVTDASDSDTVHPKPGTLRHAVVQNRPLWITFAHSMIITLSQELLINSNKTIDARGANVRIAYGGQLTL QFVDNVIIHSLHVHDIVPRSGGDIRSSADHFGHRSCSDGDGISLFGATNIWLDHISMSNCADGLIDVIVKSTAITISNSHFTKHNDVMLVGASDTETGDK VIQLTLAFNHFGRGLVQRMPRLRWGFAHVVNNDYTHWEMYAIGGNFNPTILSQGNRFVAPPNHASKEVTKREYTEEGVWKSWIWKSEQDLLENGAFFIQS GGHMRPTNSKDVISARHGSHVSRLTRCSGALDCFVNKPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01270			Pectate lyase family protein (...		Lus10023623 [exp]	0	1
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10033599 [exp]	1.4	0.8502
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10007877 [exp]	4.6	0.8383
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Lus10037183 [exp]	4.6	0.8072
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10021270 [exp]	6.8	0.8488
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10039037 [exp]	7.1	0.8304
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10008795 [exp]	8.1	0.8209
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	11.0	0.7925
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015632 [exp]	11.4	0.7976
AT5G59050			unknown protein		Lus10001433 [exp]	11.7	0.8070
AT5G42000			ORMDL family protein (.1.2)		Lus10023031 [exp]	12.0	0.7784

Compare expression of checked genes

Lus10023623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.