Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27140 45 / 1e-05 HSP20-like chaperones superfamily protein (.1) AT5G20970 44 / 5e-05 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024258 [exp] 271 / 2e-93 AT5G04890 61 / 2e-11 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10003356 [exp] 48 / 3e-06 AT2G27140 103 / 3e-26 HSP20-like chaperones superfamily protein (.1) Lus10008426 [exp] 44 / 5e-05 AT2G27140 111 / 7e-29 HSP20-like chaperones superfamily protein (.1) Lus10028874 [exp] 41 / 0.0005 AT5G04890 103 / 4e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10028577 [exp] 41 / 0.0006 AT1G76770 152 / 3e-44 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G070100 [exp] 140 / 4e-41 AT2G27140 74 / 3e-16 HSP20-like chaperones superfamily protein (.1) Potri.015G064800 [exp] 128 / 2e-36 AT1G07400 64 / 7e-13 HSP20-like chaperones superfamily protein (.1) Potri.008G013800 [exp] 49 / 1e-06 AT5G04890 135 / 3e-36 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Potri.004G191000 [exp] 47 / 2e-06 AT2G27140 81 / 2e-19 HSP20-like chaperones superfamily protein (.1) Potri.019G037700 [exp] 40 / 0.0006 AT1G54400 93 / 5e-24 HSP20-like chaperones superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023624 pacid=23148344 polypeptide=Lus10023624 locus=Lus10023624.g ID=Lus10023624.BGIv1.0 annot-version=v1.0 ATGGCAAAACTCAGAGGTAATGAGGATCTAGCGGTGGGAGGAATAGGAGGAGTGATGCCGCAGAGAGCCGCATCCCGTGACCATCTAGTTGAGGAGTTGG TTCCTTCTTCGGCTTGGGATGAGGACATCCATTCCCTTTTTCTCCTCATCGATCTCCCTGGTTATTATGAAGGCGATCTAAGAAGCGTGAAAGACAGAGG CGGGGGAGCCAAATTGGTGGAGAAAGGCATGGGGGAGCCAGATCTGGCTCCGGTGATAGACATGGGGTTTAGGAAGGAAGATGTTAATCTGAAAGTGGAC AGTGGAGGGAAGCAGATAATAGTGACCGGAGAGAGGCTACTGAACCACAACAAATACATCTACTTCCATCAAACATATCGACTACCGTACGGGATCTCGG AAACAGACAACATTACCGGGAAATTTGACGGTGAGATCCTTTACGTCACGGTTCCGAAGCACGAGGTATCAGAGGGGACAGCAGCTGAAAGATTACCAGA CACAGTGGCATCATCAAATAGTACTAGCAATCCTGAAGAGGGAAGGATTCGTGGAATAAGCGGCAGTCAAGTTTCTGAGTTTGGGAAAGCTGAATTAGAG AAATGGGAATATTGCGGGGAAGGTTCATTAATGTCGAGAGCGATTGGGGCAATACGAAAACACAAAGGGATGGCGACAGTTGCTGTTATCGCGTTTTCAC TCGGAGTATTGATGTCTCCGAAGTTGATCAGAACACCAGCACCTGAGAAATTTTAA
AA sequence Show only first row Show all	>Lus10023624 pacid=23148344 polypeptide=Lus10023624 locus=Lus10023624.g ID=Lus10023624.BGIv1.0 annot-version=v1.0 MAKLRGNEDLAVGGIGGVMPQRAASRDHLVEELVPSSAWDEDIHSLFLLIDLPGYYEGDLRSVKDRGGGAKLVEKGMGEPDLAPVIDMGFRKEDVNLKVD SGGKQIIVTGERLLNHNKYIYFHQTYRLPYGISETDNITGKFDGEILYVTVPKHEVSEGTAAERLPDTVASSNSTSNPEEGRIRGISGSQVSEFGKAELE KWEYCGEGSLMSRAIGAIRKHKGMATVAVIAFSLGVLMSPKLIRTPAPEKF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10023624 [exp]	0	1
AT4G16400			unknown protein		Lus10038791 [exp]	3.5	0.9546
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10006084 [exp]	3.9	0.9454
AT2G23970			Class I glutamine amidotransfe...		Lus10019964 [exp]	5.8	0.9495
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015751 [exp]	6.2	0.9324
AT4G37445			unknown protein		Lus10001408 [exp]	10.4	0.9443
					Lus10037173 [exp]	11.0	0.9416
AT2G20362			unknown protein		Lus10024963 [exp]	11.2	0.9351
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10028432 [exp]	11.5	0.9379
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026779 [exp]	12.2	0.9221
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	12.7	0.9411

Compare expression of checked genes

Lus10023624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.