Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24503 698 / 0 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT1G23800 514 / 2e-179 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 514 / 4e-179 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G48170 346 / 4e-114 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G74920 342 / 2e-112 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 285 / 7e-90 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 189 / 1e-53 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G14170 184 / 3e-52 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT1G54100 162 / 5e-44 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT2G24270 158 / 2e-42 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024259 [exp] 930 / 0 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023626 [exp] 682 / 0 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 517 / 2e-180 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 512 / 2e-178 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10019387 [exp] 489 / 2e-167 AT3G24503 548 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10043245 [exp] 467 / 2e-162 AT3G24503 487 / 2e-170 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10034115 [exp] 328 / 3e-106 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042149 [exp] 320 / 1e-103 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10043470 [exp] 303 / 2e-97 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075000 [exp] 740 / 0 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.002G189900 [exp] 532 / 0 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.015G074100 [exp] 519 / 0 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.012G078700 [exp] 508 / 9e-177 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G070600 [exp] 346 / 4e-114 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 342 / 1e-112 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 287 / 9e-91 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.001G242333 [exp] 191 / 2e-54 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G283100 [exp] 191 / 3e-54 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.009G078600 [exp] 187 / 5e-53 AT2G14170 893 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10023625 pacid=23148368 polypeptide=Lus10023625 locus=Lus10023625.g ID=Lus10023625.BGIv1.0 annot-version=v1.0 ATGGAAGGTGAAAGCAACGGAAAAGCCACCTCTACTTTCTCCCATCTGATCCCCTCTGTCAAATTCACCAAGCTCTTCATCAATGGCCAGTTCGTCGATT CCGTTTCAGGGAAAACATTCGAGACTATATCGCCGAGAACAGGGGAAGTCATCGCCCATGTAGCCGAAGGAGACAAGTCCGACGTGGACCTCGCCGTCGT GGCAGCCCGCGATGCTTTCGATAACGGCCCATGGCCTCGAATGTCCGGCTTTGCGAGAGGGAGAATAATGATGAAATTCGCGGACTTGATGGAACAGAAC ACCGATGAAATCGCGGCGTTGGAGGCCGTCGACGGCGGGAAGCTGTTCATGTTCGGTAAGATGGGTGACGTTCCATTCGGCACGAACCAGATACGGTACT ACGCTGGAGCGGCGGACAAGATTCACGGGGATGTGTTGAAAATGTCGAGGGAGCTTCACGGGTATACATTGCTGGAACCGTTTGGAGTGGTGGGACTCAT TGTTCCATGGAATTTCCCCTGTAGCCTCTTCTTCTCGAAAGTAGCTCCTGCTCTTGCCGCCGGCTGCACCATGGTTGTCAAGCCCGCCGAGCAGACTCCT CTCTCCGCTCTCTTGTTTGCTCATCTTGCCAAGGAGGCCGGAATCCCTGACGGAGTGCTGAATGTGGTGAATGGATTGGGGGAAACGGCAGGAGCGGCCA TTTCATCCCACATGGACATCGACAAGGTAAGTTTCACCGGATCGACTGCGGTTGGAAGGAAGATAATGCAGGCAGCAGCATTGAGCAACTTGAAGCCCGT CTCTCTGGAGCTCGGCGGCAAATCCCCTGTTTTGATCTTCGACGATGCTGATGTGGACAAAGCTGTTGATCTTGCTCTCCAAGCCATTTTCTACAACAAA GGAGAAGTTTGTGCGGCGGGTTCACGTGTATATGTCCAGGAAGGGATCTACGAGGAGTTTGTGAAGAAGTTAGCTGACAAGTCCAAGGAATGGACATCCG GTGACCCTCTAGATCCCACCTCTCGCATTGGTCCTCAAGTGAGTAAGACGCAGTACGAGAAAGTGTTGTCATATATTGAACACGGCAAGAGAGAAGGAGC AACCTTGCTAACCGGCGGCAACCCCGCTTCCGACACAGGCTACTACATCCAGCCCACTGTTTTCACCGATGTCCAGGAAGACATGCTGATAGCCACAGAC GAAATCTTCGGACCAGTTATGGCATTGATGAAGTTCAAGACAATGGAAGAGGGGATTAAGTTAGCAAACAACACAAAGTATGGCCTAGCTTCAGGAATTG TGACCAAAAGCTTGGACATAGCCAACACAGTGTCTAGATCAATACGAGCTGGATCGGTCTGGATCAATTGCTACCATGGGTTCGACGTGGATTGTCCCTT TGGTGGATACAAGATGAGTGGCTTCGGACGAGATTTTGGAATGGAAGCTCTTCACAAGTATCTCCAGGTCAAGTCCGTCGTCACTCCCATCTACAACTCT CCCTGGATGTAA
AA sequence Show only first row Show all	>Lus10023625 pacid=23148368 polypeptide=Lus10023625 locus=Lus10023625.g ID=Lus10023625.BGIv1.0 annot-version=v1.0 MEGESNGKATSTFSHLIPSVKFTKLFINGQFVDSVSGKTFETISPRTGEVIAHVAEGDKSDVDLAVVAARDAFDNGPWPRMSGFARGRIMMKFADLMEQN TDEIAALEAVDGGKLFMFGKMGDVPFGTNQIRYYAGAADKIHGDVLKMSRELHGYTLLEPFGVVGLIVPWNFPCSLFFSKVAPALAAGCTMVVKPAEQTP LSALLFAHLAKEAGIPDGVLNVVNGLGETAGAAISSHMDIDKVSFTGSTAVGRKIMQAAALSNLKPVSLELGGKSPVLIFDDADVDKAVDLALQAIFYNK GEVCAAGSRVYVQEGIYEEFVKKLADKSKEWTSGDPLDPTSRIGPQVSKTQYEKVLSYIEHGKREGATLLTGGNPASDTGYYIQPTVFTDVQEDMLIATD EIFGPVMALMKFKTMEEGIKLANNTKYGLASGIVTKSLDIANTVSRSIRAGSVWINCYHGFDVDCPFGGYKMSGFGRDFGMEALHKYLQVKSVVTPIYNS PWM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023625 [exp]	0	1
AT2G24210		AtTPS10	terpene synthase 10 (.1)		Lus10006355 [exp]	1.4	0.9606
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10037294 [exp]	2.0	0.9564
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	2.4	0.9323
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10002527 [exp]	3.0	0.8962
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	3.5	0.9172
AT4G11780			unknown protein		Lus10024488 [exp]	3.7	0.9024
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Lus10017124 [exp]	4.2	0.9150
AT5G59510		RTFL5, DVL18	DEVIL 18, ROTUNDIFOLIA like 5 ...		Lus10001569 [exp]	4.9	0.8847
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	5.0	0.9156
AT5G47700			60S acidic ribosomal protein f...		Lus10033403 [exp]	5.7	0.9001

Compare expression of checked genes

Lus10023625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.