Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24503 712 / 0 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 528 / 0 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 520 / 0 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT1G74920 356 / 2e-117 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 355 / 3e-117 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G79440 311 / 1e-99 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT2G14170 202 / 2e-58 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT3G66658 171 / 1e-46 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G24270 160 / 3e-43 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G54100 156 / 1e-41 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023625 [exp] 700 / 0 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 699 / 0 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10019387 [exp] 586 / 0 AT3G24503 548 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10043245 [exp] 535 / 0 AT3G24503 487 / 2e-170 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 529 / 0 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 526 / 0 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10034115 [exp] 340 / 2e-110 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10042149 [exp] 333 / 2e-108 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10043470 [exp] 324 / 3e-105 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075000 [exp] 777 / 0 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.002G189900 [exp] 537 / 0 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.015G074100 [exp] 533 / 0 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.012G078700 [exp] 528 / 0 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.015G070600 [exp] 358 / 2e-118 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 350 / 3e-115 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 315 / 3e-101 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.001G242333 [exp] 204 / 1e-58 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G283100 [exp] 203 / 2e-58 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.009G078600 [exp] 196 / 6e-56 AT2G14170 893 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10023626 pacid=23148289 polypeptide=Lus10023626 locus=Lus10023626.g ID=Lus10023626.BGIv1.0 annot-version=v1.0 ATGGAACGCCACGGCAATGGAAGTTCCGTCGTGGAGGACGAGTTGATCGCCGTCAAAATCTCGTCGGTGGAGATAAAGTTCACGAAGCTCTTTATCAACG GCGAATTCGTCGACGCAGTTTCAGGGAAGACGTTGGAGACGAAGGATCCAAGAACAGGGGAAGTGATTGCAAAGGTAGCAGAAGGAGACAACCAAGACAT TGATTTGGCCGTCAAGGCTGCTCGCTACGCCTTCGACCATGGCCCTTGGCCCCGCTTACCTGGCTCTGAAAGAGCAAGGATGATGCACAAATTCGCGGAC TTGATAGAGAATCACGTGGAGGAACTGGCGAAACTGGACACCCTTAACGCCGGCAAGTTGTTCAGCTGGGGCAAAGCAGTTGACATCCCTAACACCGCCA CCTGTCTACGGTACTACGCCGGCGCCGCTGACAAAATACACGGCGAGGTGTTGAAGATGTCCCGCGAGATGCATGCCTACACCCTCCGAGAGCCTATTGG CGTGGTGGGCCACATCATCCCTTGGAATTTTCCCAGCACCATGTTTTCCGCTAAAGTCAGCCCTGCCCTCGCCGCCGGCTGCACCATGGTCGTTAAGCCC GCCGAGCAAACCCCCCTTTCCGCCTTGTTCTACGCTCATTTGGCAAAACAGGCGGGAATTCCTGACGGGGTGATCAATGTGGTGAATGGGTACGGGCCAA CGGCGGGGGCCGCACTTGCATCACATATGGAAGTTGACAAGCTGAGTTTTACAGGGTCAACGGAGGCCGGTCGGAAAGTAATGCAGGCTGCAGCAACGAG TAATCTGAAACAAGTTTCACTTGAATTGGGTGGAAAATCTCCTCTCTTAATCTTCGACGACGCCGACATCGATAAAGCTGCTGATCTCGCTCTCCTAGGC ATCCTATTCAACAAGGGTGAAGTTTGTGTGGCAAGTTCAAGAGTGTTTGTACAAGAAGGGATCTATGACGAATTTGTGACAAAGTTGGTTGAAAAAGCCA AAGATTGGGTGGTTGGAGATCCTTTCAACCCCAATTCTCGTCTTGGTCCGCAGGTTGATAAGAAGCAGTATGAGAAAATAATGTCTTACATTGAGCACGG GAAAATACAAGGAGCCACTTTGTTAACCGGTGGAAAACCGGCCTTTAACAAAGGGTATTACATCCTACCTACAATCTTTACGGATGTTACGGAGAATATG ATGATAGCCCAGGACGAAATCTTTGGGCCAGTCATGGCACTAATGAAGTTCAAAACCATGGAGGATGCGATAAAATCGGCCAACAACACGAGGTATGGAC TAGCAGCAGGGATAGTTACCAACAACTTGGACATAGCAAATACGGTGGCAAGATCCATAAAAGCAGGAGTGATATGGATCAACTGTTACTTTGCATTTGA CAACGACTGTCCATACGGAGGTTACAAATCAAGTGGGTTCGAGAGAGATCTTGGGTTAGATGCTCTCCATAAGTACCTCCATGTTAAATCTGTGCCAAGC CCGAGAGCTGAACTCCGAGGTGTGTTGTATGGCCTTGAACTTGCTTGGGATTCTGGCTATATGAAAATCGCTCTCCAGATGCACCCCATGTGTGGCTATT ACTAG
AA sequence Show only first row Show all	>Lus10023626 pacid=23148289 polypeptide=Lus10023626 locus=Lus10023626.g ID=Lus10023626.BGIv1.0 annot-version=v1.0 MERHGNGSSVVEDELIAVKISSVEIKFTKLFINGEFVDAVSGKTLETKDPRTGEVIAKVAEGDNQDIDLAVKAARYAFDHGPWPRLPGSERARMMHKFAD LIENHVEELAKLDTLNAGKLFSWGKAVDIPNTATCLRYYAGAADKIHGEVLKMSREMHAYTLREPIGVVGHIIPWNFPSTMFSAKVSPALAAGCTMVVKP AEQTPLSALFYAHLAKQAGIPDGVINVVNGYGPTAGAALASHMEVDKLSFTGSTEAGRKVMQAAATSNLKQVSLELGGKSPLLIFDDADIDKAADLALLG ILFNKGEVCVASSRVFVQEGIYDEFVTKLVEKAKDWVVGDPFNPNSRLGPQVDKKQYEKIMSYIEHGKIQGATLLTGGKPAFNKGYYILPTIFTDVTENM MIAQDEIFGPVMALMKFKTMEDAIKSANNTRYGLAAGIVTNNLDIANTVARSIKAGVIWINCYFAFDNDCPYGGYKSSGFERDLGLDALHKYLHVKSVPS PRAELRGVLYGLELAWDSGYMKIALQMHPMCGYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	0	1
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	1.4	0.9584
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	1.7	0.9385
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	2.0	0.9423
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	3.2	0.9219
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	4.0	0.9310
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	4.2	0.8927
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Lus10011358 [exp]	5.5	0.9093
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	5.9	0.9035
AT1G33100			MATE efflux family protein (.1...		Lus10005685 [exp]	7.7	0.8833
AT1G04220		KCS2	3-ketoacyl-CoA synthase 2 (.1)		Lus10021895 [exp]	8.8	0.8734

Compare expression of checked genes

Lus10023626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.