Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03940 934 / 0 Protein kinase family protein (.1) AT5G18190 931 / 0 Protein kinase family protein (.1) AT2G25760 872 / 0 Protein kinase family protein (.1.2) AT3G13670 870 / 0 Protein kinase family protein (.1) AT3G03930 330 / 9e-108 protein kinase-related (.1) AT4G26100 201 / 5e-57 CKL1, CK1 casein kinase 1 (.1) AT1G03930 197 / 2e-55 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT4G28540 197 / 2e-55 CKL6, PAPK1 casein kinase I-like 6 (.1) AT4G14340 194 / 3e-54 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT5G44100 194 / 4e-54 CKL7 casein kinase I-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024261 [exp] 1223 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10011091 [exp] 1122 / 0 AT5G18190 970 / 0.0 Protein kinase family protein (.1) Lus10042455 [exp] 898 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10026214 [exp] 890 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10039203 [exp] 885 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10005479 [exp] 868 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10025827 [exp] 864 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10014152 [exp] 834 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 833 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034500 [exp] 950 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.001G009700 [exp] 899 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 892 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 885 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 881 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.001G189100 [exp] 862 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 843 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.018G065900 [exp] 201 / 9e-57 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 198 / 7e-56 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 198 / 8e-56 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023628 pacid=23148349 polypeptide=Lus10023628 locus=Lus10023628.g ID=Lus10023628.BGIv1.0 annot-version=v1.0 ATGCCAGATTTGCAAGTTGGAGTTCGACGATCACAGAGGGTCAGAAATAACCAGAACCCTGCTGGTGTAGTTGCTACTGCAACGCGTGGTGGTAGAAGAG GACGTGGTAGAGGAAGGGGGTCCAGAGTGATGAATCAAGATGAAAATGCCAACTTTTTAGGAACTGGCGTACCCGATCAAACCCGACCAGGATTGGAATT GCCAGTAAGGCAACCAGTTGAAAGAAGTGCTGAAAAATTGGTAGTAGGTGAAGAGGAAGGGAGCGCAAGTCCCGTACCTGAACGGGTGAAACTTGGCAAT TCACCAGTATTTAAAATAGATAGAAAGCTTGGTAAGGGAGGCTTTGGACAAGTTTATCTTGGGAGAAGGATGCAAGGTGGTTCGGGGCGTTCAGGGCCTG ATGCATATGAGCTTGCGTTGAAATTTGAGCACAAAAACAGTAAAGGATGCAATTACGGTCCTCCGTATGAGTGGCAAGTGTATAGCTCTCTTAATGGTTG CTATGGGCTTCCTTTAGTTCATTACAAAGGTCAACAAAACGATTACTATATCCTTGTAATGGACATGCTGGGGCCTAGCCTATGGGATGTTTGGAACTCC AACAATCAAATGCTGTCTGAACAGATGGTTGCTTGTATAGCAGTGGAGGCAATATCTATTTTGGAACAGCTGCACTTGAGAGGCTTTGTGCACGGAGATG TCAAGCCAGAGAACTTTTTGCTTGGTCTGCCTGGAACACCTGAAGAGAAGAAACTTTATCTAGTGGATCTTGGTTTGGCTTCAAGGTGGAAGGATTCAAC GTCCGGTGGCCATGTGGATTATGACCAAAGGCCTGATGTTTTCAGAGGCACTGTTCGCTATGCAAGTGTACATGCACATTTGGGCAGGACAGGGAGCCGG AGGGATGACCTTGAGTCATTAGCGTACACCTTAGTATTTCTTCTTAGGGGAAAGCTCCCGTGGCAAGGTTATGTTGGTGAAAATAAGAGTTTCCTTGTCA GTAAGAAGAAGATGGCTACTTCTCCAGAGATGCTGTGTTGCTTGTGCCCTGCTCCGTTTAAACATTTTCTTGAGATGGTGACTAATATGAAATTTGACGA AGAGCCGAATTATTCAAGGCTTATTTCCATTTTCGATAGCCTTTTAGGCTCTAATGTCTCGTTACGACCCATCCTGACAGATGGGGCTATAAAGGCAGGC CAAAAGAGGGGAAGGTCTCTTGTTGAGTTTGGGGATGAGGGTCAACCGAAAAAGAAAATTCGCCTCGGTACTCTTGCTACACAGTGGATTTCAGTATACA ATAATAGAAATTCAATGAAGCAGAGATACCACTATAATGTTGTGGACTCGAGGCTTGGCCAACATGTGGAGAAAGGAAGGGAAGATGGTTTGTTCATTAG CTGCGTCTCTTCATCTTCAAATCTCTGGGCCATCGTCATGGATGCAGGAACTGGGTTCTCTACCCAAGTCTATGAATTATCACCTGTTTTCTTGCCCAAG GAGTGGATAGTGGAACAGTGGGACAAAAACTTTTACATCACATCTATCGCTGGCACAACTAATGGGACCTCTTTAGTGGTTATGTCTAAGGGAACTGCTT ATACACAACAATCATACAAAGTGAGCGATGCATTCCCATTCAAATGGATCAATAAAAAATGGAAAGAAGGTTTCTCTGTTACTTCAATGACTAGTGCAGG AAGTAAGTGGGGGATTGTCATGTCCAGGAATGCAGGTTATACAAATCAGGTGGTTGAACTCGATTTCCTTTATCCTAGTGAAGGGATACATAGGAGATGG GAGAATGGATATCGAATTACCTCATGTGCCGCTACAGCTGACCAGGCTGCATTCATACTTAGCACACCCAAGAAGAAATCACCAGATGTCGCTCAAGAAA CCTTGAGAACATCTGCCTTTCCTAGTACTCATGTTAAGGTCGGTGGTTTAATTCTTCGCATTCAGATAGCCGATGCTTCGAAGAACACCAAAGTGTGCCT AGAGAAATTCAGTTTTTTGGTTGCTGCTGAGCTTTATTACTACTACTACAACCTGGATGGTGAACAATATCCTGAAGAGCTGGGCATTATATCCTACCTA TTCTTCATGGAGTGGCTCATTCTGGCCTCGCCTTATTCTAAGAGGACAAAAAAAAAACCAAGTTGTATAGTGACTCATTCTACGAGAGAGAACCTGACGC CTTATTCTGCAACTTGTATACTAGGGTGGGGAGGAGGGGCTCTGATTGCTTGTAAGTTGTAA
AA sequence Show only first row Show all	>Lus10023628 pacid=23148349 polypeptide=Lus10023628 locus=Lus10023628.g ID=Lus10023628.BGIv1.0 annot-version=v1.0 MPDLQVGVRRSQRVRNNQNPAGVVATATRGGRRGRGRGRGSRVMNQDENANFLGTGVPDQTRPGLELPVRQPVERSAEKLVVGEEEGSASPVPERVKLGN SPVFKIDRKLGKGGFGQVYLGRRMQGGSGRSGPDAYELALKFEHKNSKGCNYGPPYEWQVYSSLNGCYGLPLVHYKGQQNDYYILVMDMLGPSLWDVWNS NNQMLSEQMVACIAVEAISILEQLHLRGFVHGDVKPENFLLGLPGTPEEKKLYLVDLGLASRWKDSTSGGHVDYDQRPDVFRGTVRYASVHAHLGRTGSR RDDLESLAYTLVFLLRGKLPWQGYVGENKSFLVSKKKMATSPEMLCCLCPAPFKHFLEMVTNMKFDEEPNYSRLISIFDSLLGSNVSLRPILTDGAIKAG QKRGRSLVEFGDEGQPKKKIRLGTLATQWISVYNNRNSMKQRYHYNVVDSRLGQHVEKGREDGLFISCVSSSSNLWAIVMDAGTGFSTQVYELSPVFLPK EWIVEQWDKNFYITSIAGTTNGTSLVVMSKGTAYTQQSYKVSDAFPFKWINKKWKEGFSVTSMTSAGSKWGIVMSRNAGYTNQVVELDFLYPSEGIHRRW ENGYRITSCAATADQAAFILSTPKKKSPDVAQETLRTSAFPSTHVKVGGLILRIQIADASKNTKVCLEKFSFLVAAELYYYYYNLDGEQYPEELGIISYL FFMEWLILASPYSKRTKKKPSCIVTHSTRENLTPYSATCILGWGGGALIACKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03940			Protein kinase family protein ...		Lus10023628 [exp]	0	1
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009228 [exp]	8.7	0.7849
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	10.7	0.7796
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10013270 [exp]	11.5	0.7951
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	13.6	0.7727
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10036219 [exp]	15.2	0.7897
AT1G35510			O-fucosyltransferase family pr...		Lus10001545 [exp]	20.5	0.7074
AT3G15470			Transducin/WD40 repeat-like su...		Lus10027670 [exp]	20.8	0.7525
AT5G20680		TBL16	TRICHOME BIREFRINGENCE-LIKE 16...		Lus10027651 [exp]	21.8	0.7725
AT5G39785			Protein of unknown function (D...		Lus10015368 [exp]	23.6	0.7705
AT1G29120			Hydrolase-like protein family ...		Lus10013909 [exp]	27.3	0.7419

Compare expression of checked genes

Lus10023628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.