Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13270 220 / 2e-72 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G52330 153 / 2e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT3G54200 52 / 4e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44380 50 / 2e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024264 [exp] 324 / 4e-113 AT4G13270 210 / 8e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011095 [exp] 293 / 6e-101 AT4G13270 234 / 3e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10043216 [exp] 291 / 2e-100 AT4G13270 228 / 8e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011458 [exp] 137 / 5e-40 AT1G52330 168 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10037534 [exp] 135 / 3e-39 AT1G52330 160 / 2e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10006764 [exp] 67 / 2e-13 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018361 [exp] 65 / 1e-12 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 58 / 4e-10 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020060 [exp] 57 / 1e-09 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G159400 [exp] 211 / 6e-69 AT4G13270 228 / 3e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G180600 [exp] 168 / 6e-52 AT1G52330 192 / 9e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.003G055000 [exp] 162 / 5e-50 AT1G52330 181 / 1e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.016G142300 [exp] 62 / 9e-12 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 62 / 1e-11 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 59 / 2e-10 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 57 / 4e-10 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G218400 [exp] 48 / 1e-06 AT3G44380 229 / 1e-77 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 48 / 1e-06 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098200 [exp] 44 / 2e-05 AT1G64065 102 / 2e-27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10023631 pacid=23148381 polypeptide=Lus10023631 locus=Lus10023631.g ID=Lus10023631.BGIv1.0 annot-version=v1.0 ATGCCGTCGTCGAAGACCACCTCCGCCGGAGACTCCCCGGCGAATTCAGTGCCCTACACCGCTCTCCCCGCGGACTATCCTCCAAACTACATCCTTCTCC CTTACTACCGCCCACCACCACCTAACCCTATCCTGCTCTTCCTCCGTCGATGCCTCGCCTTCACCGTTCTCATTCTCCTCCTCTCCTCCGCCGTCTTCTT CCTCTACCCTTCCGACCCTGATATCACCGTCCTCCGGGTCGGGATCAACCGCATCCAAGTCCATTCCTCCCCCAAGCTCACCCTCGACATCTCGTTATCC CTCACCGTCAAGGTTCGGAACCCGGACGTCTTTTCCCTGGATTACGATTACCTGTCTGTGTCAATCGGGTACAGAGGGAGGCAGCTCGGCGTCGTGAGAT CGCAGGGAGGGAGCGTTAAGGCCAGAGGATCTTCCACCGTTTACGCCACGCTTGATTTGAACGGCCTCGAGTTCGTTTGGGATTCGTTCTACTTGATTGA GGATTTGGCTAAGGGTGTCGTCCCTTTCGATACGATGACCACGGTCAGCGGCGATTTAGGTCTCTTATTCTTCAAAATTCCTATGGAGGGGAAAGTGTCA TGTGATGTTTACGCGAGTACAAAGAATCAGACGGTCGTCCGGCAACATTGCTACCCTGTGGTAAGAAACCTTAATATCTCTATATATTTTATTAACATTA GCAGATGA
AA sequence Show only first row Show all	>Lus10023631 pacid=23148381 polypeptide=Lus10023631 locus=Lus10023631.g ID=Lus10023631.BGIv1.0 annot-version=v1.0 MPSSKTTSAGDSPANSVPYTALPADYPPNYILLPYYRPPPPNPILLFLRRCLAFTVLILLLSSAVFFLYPSDPDITVLRVGINRIQVHSSPKLTLDISLS LTVKVRNPDVFSLDYDYLSVSIGYRGRQLGVVRSQGGSVKARGSSTVYATLDLNGLEFVWDSFYLIEDLAKGVVPFDTMTTVSGDLGLLFFKIPMEGKVS CDVYASTKNQTVVRQHCYPVVRNLNISIYFINISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13270			Late embryogenesis abundant (L...		Lus10023631 [exp]	0	1
AT1G65270			unknown protein		Lus10020224 [exp]	1.4	0.8599
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10037607 [exp]	4.2	0.8063
AT4G28100			unknown protein		Lus10039742 [exp]	4.5	0.7641
AT4G13270			Late embryogenesis abundant (L...		Lus10024264 [exp]	4.5	0.7994
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10015264 [exp]	7.7	0.8163
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022045 [exp]	10.7	0.7507
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025406 [exp]	14.8	0.8032
AT5G60800			Heavy metal transport/detoxifi...		Lus10016133 [exp]	16.3	0.7570
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	16.7	0.7472
					Lus10010972 [exp]	17.0	0.7986

Compare expression of checked genes

Lus10023631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.