Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67910 49 / 5e-09 unknown protein AT3G13227 46 / 1e-07 serine-rich protein-related (.1) AT1G24577 45 / 2e-07 unknown protein AT5G20370 44 / 1e-06 serine-rich protein-related (.1) AT5G55980 43 / 2e-06 serine-rich protein-related (.1) AT3G56500 43 / 2e-06 serine-rich protein-related (.1) AT5G25280 42 / 6e-06 serine-rich protein-related (.1.2) AT5G11090 41 / 2e-05 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034901 [exp] 148 / 3e-48 AT1G67910 49 / 6e-09 unknown protein Lus10011094 [exp] 62 / 4e-14 AT5G55980 44 / 1e-06 serine-rich protein-related (.1) Lus10043215 [exp] 56 / 1e-11 AT5G55980 44 / 8e-07 serine-rich protein-related (.1) Lus10023227 [exp] 44 / 9e-07 AT5G55980 69 / 3e-16 serine-rich protein-related (.1) Lus10008880 [exp] 44 / 9e-07 AT5G55980 63 / 1e-13 serine-rich protein-related (.1) Lus10006660 [exp] 44 / 2e-06 AT5G25280 144 / 4e-43 serine-rich protein-related (.1.2) Lus10000442 [exp] 41 / 4e-06 AT1G67910 56 / 1e-11 unknown protein Lus10008808 [exp] 43 / 5e-06 AT5G25280 153 / 2e-46 serine-rich protein-related (.1.2) Lus10038100 [exp] 43 / 5e-06 AT5G25280 145 / 4e-43 serine-rich protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079200 [exp] 74 / 6e-19 AT1G67910 45 / 9e-08 unknown protein Potri.010G046700 [exp] 47 / 4e-08 AT1G67910 82 / 4e-22 unknown protein Potri.018G120300 [exp] 46 / 7e-08 AT5G11090 67 / 1e-14 serine-rich protein-related (.1) Potri.008G186200 [exp] 45 / 2e-07 AT1G67910 85 / 4e-23 unknown protein Potri.001G371400 [exp] 46 / 3e-07 AT5G55980 50 / 2e-08 serine-rich protein-related (.1) Potri.006G060700 [exp] 44 / 7e-07 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.006G159300 [exp] 42 / 2e-06 AT1G24577 43 / 5e-07 unknown protein Potri.002G250700 [exp] 42 / 5e-06 AT3G56500 43 / 5e-06 serine-rich protein-related (.1) Potri.018G078900 [exp] 40 / 8e-06 AT3G13227 42 / 3e-06 serine-rich protein-related (.1) Potri.006G060800 [exp] 41 / 2e-05 AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023632 pacid=23148296 polypeptide=Lus10023632 locus=Lus10023632.g ID=Lus10023632.BGIv1.0 annot-version=v1.0 ATGGCTTCTCACGGAAGCCTAACGGTTTCAGTTACCTCACCGAAAGGCGGCGGCACCGATAGGGAAGGCGCCGGAAGGCCTACTACCGGTGGGCAGTGCT TGTGCTCGCCGACGACGCACCCGGGATCCTTTAGGTGCAGGCTCCATCGTACTTCTTCTTCATCAGCGGCTTGGAGTAAGATGAAACGATCATCTTCCAT CCCAGCTTATGAAACTTCTGCTGCTCATAACTCTTCTACTTGTACTTCTCCCAATTCTGTTGAATCTGCTTGA
AA sequence Show only first row Show all	>Lus10023632 pacid=23148296 polypeptide=Lus10023632 locus=Lus10023632.g ID=Lus10023632.BGIv1.0 annot-version=v1.0 MASHGSLTVSVTSPKGGGTDREGAGRPTTGGQCLCSPTTHPGSFRCRLHRTSSSSAAWSKMKRSSSIPAYETSAAHNSSTCTSPNSVESA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67910			unknown protein		Lus10023632 [exp]	0	1
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10037816 [exp]	2.8	0.9659
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	4.2	0.9666
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10038896 [exp]	4.6	0.9614
AT5G65660			hydroxyproline-rich glycoprote...		Lus10028220 [exp]	4.9	0.9542
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10017094 [exp]	8.9	0.9559
AT1G49570			Peroxidase superfamily protein...		Lus10009901 [exp]	10.5	0.9396
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10036579 [exp]	11.3	0.9496
AT5G03860		MLS	malate synthase (.1.2)		Lus10020565 [exp]	11.8	0.9568
AT3G11260	HD	WOX5B, WOX5	WUSCHEL related homeobox 5B, W...		Lus10028271 [exp]	12.2	0.9440
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	13.6	0.9603

Compare expression of checked genes

Lus10023632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.