Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034904 [exp] 321 / 1e-109 AT3G29300 54 / 2e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079400 [exp] 85 / 8e-19 AT3G29300 69 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023634 pacid=23148287 polypeptide=Lus10023634 locus=Lus10023634.g ID=Lus10023634.BGIv1.0 annot-version=v1.0 ATGAAGGGAGCTTCTAAAGTGATAATGGGAGCCACGGTGGTGATGGTTGTAAGCCTAGCAGTTGTACTTTCCCTAGTCCTAGTCCTCCTAGCTGAGCTCT ACTGCAACCTCATTCTCCGCCGCCGTCAGCAACGACTCGAGGCGGCTTCCTCCCTCATAGACACCCCTATCACCACCGCCGCCGCCACTCCTGCCGCCGC TATTTCCTCGTCGTCCCCTTCCGACTTACCGTTCACAGCTCCTCCTGGAGTCCTCCGAGCTCCCAGAAGCTTCCTCTTCCCGGCCACCAAAGAAGCTTCT AAGCATGTTGCCCGGAGTCACCAATCGCTGCATCACGTGCTGGAGCTCTACTCCCCACGTGACGACTCCTCATCGTCGAAAGCCGCAAGCCCACAACAAA TCGGCCAATTGCGAACTCCTCCGCCGCCGGTGTCCTACCTCTCTTCCCCTCAAGAAATCAGAGATATCTCAGCCGTACAGGTATCCTCCCCCTCCCCGTC ATCCGCCCTCCATAAGGAGGCTACCAACAACGACAAGAAAGAGCAGCAGCATTTCATCTACATATCGAATCCCATCTACGACAACAGCAGCAGGATTAGC TGCAATGGGGGAGGAGACACCCCGTTCGAAACCCCCGATACTTCTCCGTCCCGTTTTGAGGAGAGCAGTAGTAGCGGCAGCGATGATGAAGTAGCTCAGG GAGTAGTGAGTAGTAATAACAATAGTGAGTCACTGCTACTACTAGCTCATACCAACAATAGTATCACTATTACGCCACCGCTAACTCCGATGAAGAAGCT GCCGGCTGAAGCTTCGCCGGTATCGTTGCTGTCGTTGGGTACTTTGGGGAGCGACTCGGTGAGCAATGTGAATGGGATGTCTTCTTCCTCATCTGGCACT CCTTGCACTTCTCCTTCTTGGTGA
AA sequence Show only first row Show all	>Lus10023634 pacid=23148287 polypeptide=Lus10023634 locus=Lus10023634.g ID=Lus10023634.BGIv1.0 annot-version=v1.0 MKGASKVIMGATVVMVVSLAVVLSLVLVLLAELYCNLILRRRQQRLEAASSLIDTPITTAAATPAAAISSSSPSDLPFTAPPGVLRAPRSFLFPATKEAS KHVARSHQSLHHVLELYSPRDDSSSSKAASPQQIGQLRTPPPPVSYLSSPQEIRDISAVQVSSPSPSSALHKEATNNDKKEQQHFIYISNPIYDNSSRIS CNGGGDTPFETPDTSPSRFEESSSSGSDDEVAQGVVSSNNNSESLLLLAHTNNSITITPPLTPMKKLPAEASPVSLLSLGTLGSDSVSNVNGMSSSSSGT PCTSPSW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29300			unknown protein		Lus10023634 [exp]	0	1
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10006548 [exp]	2.0	0.9480
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	4.2	0.9511
AT3G29300			unknown protein		Lus10034904 [exp]	4.6	0.9540
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10017434 [exp]	9.2	0.9485
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	15.5	0.9389
AT5G40030			Protein kinase superfamily pro...		Lus10014501 [exp]	16.6	0.9478
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	19.9	0.9429
AT5G59790			Domain of unknown function (DU...		Lus10004943 [exp]	22.3	0.9409
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10041538 [exp]	22.4	0.9341
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	25.9	0.9357

Compare expression of checked genes

Lus10023634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.