Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32350 251 / 3e-73 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 215 / 2e-63 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 155 / 1e-41 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 130 / 3e-32 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G34220 128 / 6e-31 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G25420 114 / 1e-27 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT2G19710 111 / 4e-25 Regulator of Vps4 activity in the MVB pathway protein (.1) AT2G14830 104 / 2e-23 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 97 / 4e-21 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 98 / 7e-21 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034905 [exp] 1132 / 0 AT4G32350 256 / 3e-75 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10011455 [exp] 198 / 2e-57 AT1G79910 233 / 1e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025932 [exp] 203 / 1e-55 AT5G48840 440 / 2e-149 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10035885 [exp] 188 / 3e-52 AT1G79910 235 / 1e-72 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10037536 [exp] 165 / 4e-45 AT1G79910 191 / 2e-57 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025779 [exp] 166 / 4e-44 AT1G79910 199 / 8e-59 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10006061 [exp] 126 / 1e-30 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028724 [exp] 124 / 6e-30 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028383 [exp] 122 / 2e-29 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079500 [exp] 527 / 2e-180 AT4G32350 240 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.001G181300 [exp] 208 / 3e-59 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054500 [exp] 197 / 4e-55 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054700 [exp] 142 / 3e-36 AT1G79910 141 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054601 [exp] 141 / 9e-36 AT1G79910 140 / 3e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 125 / 9e-32 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.013G117100 [exp] 129 / 4e-31 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 125 / 2e-30 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.019G087400 [exp] 124 / 1e-29 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.006G149800 [exp] 123 / 7e-29 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10023635 pacid=23148268 polypeptide=Lus10023635 locus=Lus10023635.g ID=Lus10023635.BGIv1.0 annot-version=v1.0 ATGCTGGACGGATTATTAGGTCGAGGCTTCGCTACGAAATGCAAATCACTGATAAAACAGACTAAGAGTAGGATCGATGTGATTCGGAGAAAGAGAAGCG CTACTCTAAAGTTTCTAAAGAAAGATGTAGCCGATCTGCTCACCAATGGACTCGAAATCAACGCTTATGGCCGGGCTGAAGGACTTGTGGCCGAGTTGAT CTTATCCTCCTGCTATGATTTTGCTGAGCGCTGCTGTGATCTTGTGCTGAAGCATCTCTCCGTCATGCAAAAGATGAGACATTGCCCCGAGGACTGCAGG GAGGCTGTATCATCCATAATGTTTGCTGCAGCAAGATTCTCCGATCTACCTGAATTACGAGATCTTAGGCAACTATTTCTTGAGAGATATGGTGATTCCT TGGAACTCTATGTGAATCAAGGGTTTGTCAACAACATGTCTGTTAAACCTGTCACGACCGAGAAGAAAATTCAACTATTGCAAGATATTGCATCAGAGTT CTCTATCAGATGGGACTCCAGGGGTTTTGAACAGAGGATGTCTAGACCGACTCCAGTGCAGGAGCAACCTAGAACTTATCCTTCCCCCCTTGCTAATGGT AGCAATTCTAGCTTAACCGGTGTGAAGGACAGCATTACTCAAGGGGTTAAACGTGATCTCCCAGCGAAAGAAAGGCAAGAAGAGAAAAAGCATGACTTTG GGTTGAACAATGAAGAGAAAAATGTCTGGAAAAAGGATGAGCTGAATCCGCGTTCAAGGAATGAAGGTCTCAATCATGTCATCAAATTGCAGAACGGAGG AGATAAAGAAACTACTCCGAGACATAATAAGTATGAGTTGTTGTCTCCTCCTACAAGGCAAGAAGTTCATGTTGTGAAGAAGCATGGACCTATAAAGGAT AATCCTCATCTGAAAACAGCGAGTTCAGGCATTTCATCTCATCGGAAACAACATCCAAGTAAGCCGTATAAAGTTGATCTCGTGGATGATAGGATTCATG GAAAACCAGAACCTTCTCCTAGTAATTTTGGACAACGGTCAAATGGCAACGGCAAAGATCCATTGGCTTGTAATGTGTATGTTGGCAGCAAATACCCAGC TGAAAAATCGACACAAGCTGCACAGGAAGAAGAAGCACAGAAGTTGAAATCTTTCTACAACAGTCCCATGCCGCCTCCTTACACAAGACCAAATACTAAG GTGAAGGACAGCAAGTCTGCAGTTAATGTAGGATCTGCAAATACAGTTTCAGATGGTGATGCAATCGACACATCCAGGGCCCAGGGGATCAATCATGGTT ATCGGTCTGAAAACAACGGTACAGGATCGCATCATCCTGACCGTGCAGGACTAGAAAGAGGTGATGAACATGTGTTTGACACCAAGGTTTATTACCAGGG TGATACTACTACTACTGCTACAGCCAACCCCATCCCAAAACCACGATCTTCCAGGAGACGACACCAAAAGTCACAAATCAGTCATCATGACAATGGCAGT ACCGTGGAATCTGCTGGAGTTGTTAAGAAGAAAATAAGGAGCAGCAGGAGAAAGGACGACTCGAGGCGGGGCCTGCAGATCTTGTTCGACGATGAGCAAG AGAAGAGTGACGAAGAGGAAAGGATCATAGATAAACTGCTGGTCCACTACAGCAAGAAACCTTCCACTTACGAGGCCGAACCTGGAAAAATCGTTAGAAA GAAGTCGAGGAGTCATCATCATTCCAGTCACCCAAGCACAGACAAATCTCCATCCCAAATTGGCAGAGATGATGATGGTGAAACCTCGGCCTCAGTACAT TCTCATCCGTCCAGATCATTTTCCCTCCCTAGCGAACAACCATCGTCAATCCAGCCACCCCAACAAAACAAAGTGTTCACTCGTGCAGCTTCCTTTGAGC CAGATAGGTCTTCTTCGGCAGCTGCTCGACACGTCCATCCAAAGCTACCTGACTACGACGACTTGGCTGCACGATTTGCAGCCCTGAAAGGGAGGTAA
AA sequence Show only first row Show all	>Lus10023635 pacid=23148268 polypeptide=Lus10023635 locus=Lus10023635.g ID=Lus10023635.BGIv1.0 annot-version=v1.0 MLDGLLGRGFATKCKSLIKQTKSRIDVIRRKRSATLKFLKKDVADLLTNGLEINAYGRAEGLVAELILSSCYDFAERCCDLVLKHLSVMQKMRHCPEDCR EAVSSIMFAAARFSDLPELRDLRQLFLERYGDSLELYVNQGFVNNMSVKPVTTEKKIQLLQDIASEFSIRWDSRGFEQRMSRPTPVQEQPRTYPSPLANG SNSSLTGVKDSITQGVKRDLPAKERQEEKKHDFGLNNEEKNVWKKDELNPRSRNEGLNHVIKLQNGGDKETTPRHNKYELLSPPTRQEVHVVKKHGPIKD NPHLKTASSGISSHRKQHPSKPYKVDLVDDRIHGKPEPSPSNFGQRSNGNGKDPLACNVYVGSKYPAEKSTQAAQEEEAQKLKSFYNSPMPPPYTRPNTK VKDSKSAVNVGSANTVSDGDAIDTSRAQGINHGYRSENNGTGSHHPDRAGLERGDEHVFDTKVYYQGDTTTTATANPIPKPRSSRRRHQKSQISHHDNGS TVESAGVVKKKIRSSRRKDDSRRGLQILFDDEQEKSDEEERIIDKLLVHYSKKPSTYEAEPGKIVRKKSRSHHHSSHPSTDKSPSQIGRDDDGETSASVH SHPSRSFSLPSEQPSSIQPPQQNKVFTRAASFEPDRSSSAAARHVHPKLPDYDDLAARFAALKGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32350			Regulator of Vps4 activity in ...		Lus10023635 [exp]	0	1
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	2.6	0.8603
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036195 [exp]	3.2	0.8459
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10011907 [exp]	5.7	0.8585
AT1G13940			Plant protein of unknown funct...		Lus10030419 [exp]	6.2	0.8571
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	7.2	0.8564
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10006378 [exp]	8.0	0.8400
AT1G71090			Auxin efflux carrier family pr...		Lus10016705 [exp]	11.8	0.8093
AT4G16440			ferredoxin hydrogenases (.1)		Lus10039061 [exp]	14.2	0.7508
AT5G06560			Protein of unknown function, D...		Lus10015990 [exp]	14.2	0.7997
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10011968 [exp]	17.3	0.8252

Compare expression of checked genes

Lus10023635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.