Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13260 544 / 0 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT5G25620 530 / 0 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT5G11320 481 / 7e-170 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT1G04610 478 / 2e-168 YUC3 YUCCA 3 (.1) AT1G04180 464 / 3e-163 YUC9 YUCCA 9 (.1) AT4G28720 464 / 6e-163 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT4G32540 461 / 5e-162 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT5G43890 459 / 3e-161 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT2G33230 456 / 9e-160 YUC7 YUCCA 7 (.1) AT1G21430 344 / 2e-116 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011093 [exp] 654 / 0 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10013125 [exp] 497 / 5e-176 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10007671 [exp] 497 / 2e-175 AT4G13260 518 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10008092 [exp] 489 / 4e-173 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10024023 [exp] 486 / 1e-171 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10023695 [exp] 482 / 1e-169 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10035244 [exp] 480 / 3e-169 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10041729 [exp] 479 / 2e-168 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10022851 [exp] 462 / 3e-162 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243400 [exp] 556 / 0 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 550 / 0 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 504 / 5e-179 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.006G248200 [exp] 479 / 6e-169 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 478 / 1e-168 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.008G174600 [exp] 478 / 2e-168 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.018G033200 [exp] 467 / 2e-164 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.010G062400 [exp] 461 / 3e-160 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.005G111800 [exp] 348 / 6e-118 AT1G21430 425 / 4e-148 Flavin-binding monooxygenase family protein (.1) Potri.005G186100 [exp] 347 / 2e-117 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10023637 pacid=23148269 polypeptide=Lus10023637 locus=Lus10023637.g ID=Lus10023637.BGIv1.0 annot-version=v1.0 ATGTCATCAACGACAGCAAGAACTGTGTGGGTCCCAGGAGCCTTGATTGTCGGCGGCGGCCCTTCCGGCCTGGCAACGGCGGCCTGCCTAAAGGCAAAGG GTGTCCCGAGCTTAATCGTAGAGCGTTCCGATTGCATAGCTTCACTTTGGAAGCACAAGACCTACGATCGCCTCCGGCTTCACCTCCCTAAGCAGTGTTG CCAGCTCCCTCTCATGCCCTTTCCCTCAGATTTCCCGACTTACCCAACCAAGCAGCAGTTCCTGGCCTACTTGGAGGCGTACCGCTCACGGTTCGTGCTC GAACCGGTTTTTAACTGTGAAGTGGTCAAAGCAGAGTTTGACCGCAACTGCGAGTTCTGGAAGGTCAACACCCTCCAGCATCACGGTCAACAGCATGAGG TGGAGTATGTCTGTCAGTGGCTTGTGGTTGCGACGGGGGAGAATGCGGAGGCTGTGGTTCCCGAATTCGAAGGGATCCAGGATTTTCGGGGTCCCGTGGT TCATACCTCCAAGTATAGGAGCGGGGAGGTGTTCGAGGGGAAGAAGGTTTTGGTCGTTGGTTGCGGGAATTCGGGAATGGAGGTCTGCTTGGACCTCTGC AATTACAAGGCTCGGACTTCTCTAGTTGTTAGAGACTCGGTGCATGTTTTGCCGCAGCAGATGCTAGGGACATCAACTTTTGGACTGTCAATGTGGTTGA TGAAGTGGCTCCCGGTTCGGGTCGTGGATCGGTTCTTGCTCCTAGTGTCTCTTTTCATGCTCGGCGACACTTCTCGACTCGGGTTGACTCGTCCAAAAAT CGGTCCCTTGGAGCTCAAGAACCTTACAGGGAAAACCCCGGTCCTGGACGTTGGAACCCTTTCCAAGATTAGACGCGGTCAAATCAAGGTTCAACGAGGG ATCAAGAAGATAACACAACAAATGGTGGAGTTTGTGGACGGGAGATTTGAATATTTTGATTGCCTAATCCTTGCTACTGGCTACAAAAGTAACGTCCCAT CATGGCTTAAGGAGACAGAGATGTTTTCAGAGAAAGATGGGTTGCCGAGGAAAGCATTCCCGAACGGGTGGAAAGGAGGAAACGGGTTGTTCGCAGTCGG GTTCACGAAACGGGGGCTGTTCGGAGCGTCGATGGACGCCAGGAAGATTGCAGAGGAGACTGAGCTCCGTTGGAAAGCTGACCAGACTACTAAAGTGAAG TAA
AA sequence Show only first row Show all	>Lus10023637 pacid=23148269 polypeptide=Lus10023637 locus=Lus10023637.g ID=Lus10023637.BGIv1.0 annot-version=v1.0 MSSTTARTVWVPGALIVGGGPSGLATAACLKAKGVPSLIVERSDCIASLWKHKTYDRLRLHLPKQCCQLPLMPFPSDFPTYPTKQQFLAYLEAYRSRFVL EPVFNCEVVKAEFDRNCEFWKVNTLQHHGQQHEVEYVCQWLVVATGENAEAVVPEFEGIQDFRGPVVHTSKYRSGEVFEGKKVLVVGCGNSGMEVCLDLC NYKARTSLVVRDSVHVLPQQMLGTSTFGLSMWLMKWLPVRVVDRFLLLVSLFMLGDTSRLGLTRPKIGPLELKNLTGKTPVLDVGTLSKIRRGQIKVQRG IKKITQQMVEFVDGRFEYFDCLILATGYKSNVPSWLKETEMFSEKDGLPRKAFPNGWKGGNGLFAVGFTKRGLFGASMDARKIAEETELRWKADQTTKVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10023637 [exp]	0	1
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10023461 [exp]	1.0	0.8787
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	3.5	0.8433
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10008544 [exp]	10.5	0.8053
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	12.0	0.8096
AT2G45410	AS2	LBD19	LOB domain-containing protein ...		Lus10009298 [exp]	12.7	0.8285
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10020835 [exp]	15.2	0.8550
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Lus10000490 [exp]	24.9	0.8460
AT3G20015			Eukaryotic aspartyl protease f...		Lus10017362 [exp]	34.2	0.8383
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Lus10041802 [exp]	36.9	0.7963
AT3G20015			Eukaryotic aspartyl protease f...		Lus10010157 [exp]	36.9	0.8322

Compare expression of checked genes

Lus10023637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.