Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48830 330 / 4e-117 Ribosomal protein S7e family protein (.1.2) AT3G02560 314 / 6e-111 Ribosomal protein S7e family protein (.1.2) AT5G16130 311 / 7e-110 Ribosomal protein S7e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034909 [exp] 385 / 5e-139 AT1G48830 331 / 1e-117 Ribosomal protein S7e family protein (.1.2) Lus10017497 [exp] 348 / 5e-124 AT1G48830 325 / 3e-115 Ribosomal protein S7e family protein (.1.2) Lus10028789 [exp] 351 / 4e-122 AT1G48830 330 / 2e-113 Ribosomal protein S7e family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G115400 [exp] 322 / 7e-114 AT3G02560 315 / 4e-111 Ribosomal protein S7e family protein (.1.2) Potri.016G100400 [exp] 322 / 8e-114 AT3G02560 313 / 1e-110 Ribosomal protein S7e family protein (.1.2) Potri.004G099200 [exp] 321 / 2e-113 AT3G02560 314 / 6e-111 Ribosomal protein S7e family protein (.1.2) Potri.006G087900 [exp] 320 / 3e-113 AT3G02560 316 / 2e-111 Ribosomal protein S7e family protein (.1.2) Potri.015G046100 [exp] 104 / 1e-29 AT1G48830 110 / 1e-32 Ribosomal protein S7e family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0652 [flax] [poplar] S24e_L23_L15e PF01251 [flax] [poplar] Ribosomal_S7e Ribosomal protein S7e
Representative CDS sequence Show only first row Show all	>Lus10023638 pacid=23148301 polypeptide=Lus10023638 locus=Lus10023638.g ID=Lus10023638.BGIv1.0 annot-version=v1.0 ATGTATACGTCAAAGCAGAAGATTCACAAAGATAAAGATGTTGAACCCTCCGAGTTTGAGGAGTCGGTTGCACAGGCATTGTTTGATTTGGAGAACACCA ACCAGGAGATGAAAAGTGAACTGAAGGATCTCTACATCAACACAGCAACTCAAATGGATGTCTCAGGTGGCCGCAAGGCAGTTGTCATCCATGTTCCTTA CAGATTGAGGAAAGCATACAGGAAGATTCATAGTAGGCTTGTTAGGGAGCTTGAGAAGAAGTTCAGTGGGAAGGATGTGGTTGTGATTGCTACCCGAAGA ATTGTGAGGCCACCAAAGAAAGGATCAGCTGCACAAAGGCCTCGCAGCCGCACACTGACTTCTGTTCATGAGGCGATACTAGATGATGTTGTGCTGCCTG CTGAGATTGTTGGCAAGAGAACCAGATACCGTGTTGATGGAACCAAGATAATGAAGGTGTTTTTGGACCCAAAGGAACAGAACAACACAGAGTACAAACT GGAGACCTTTACTTCTGTTTACAGGAAACTTACTGGGAAGGATGTTGTGTTCGAGTTCAGGCCAACTGAGGCATAG
AA sequence Show only first row Show all	>Lus10023638 pacid=23148301 polypeptide=Lus10023638 locus=Lus10023638.g ID=Lus10023638.BGIv1.0 annot-version=v1.0 MYTSKQKIHKDKDVEPSEFEESVAQALFDLENTNQEMKSELKDLYINTATQMDVSGGRKAVVIHVPYRLRKAYRKIHSRLVRELEKKFSGKDVVVIATRR IVRPPKKGSAAQRPRSRTLTSVHEAILDDVVLPAEIVGKRTRYRVDGTKIMKVFLDPKEQNNTEYKLETFTSVYRKLTGKDVVFEFRPTEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48830			Ribosomal protein S7e family p...		Lus10023638 [exp]	0	1
AT1G48830			Ribosomal protein S7e family p...		Lus10034909 [exp]	1.0	0.9871
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10030113 [exp]	2.8	0.9675
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10003844 [exp]	4.9	0.9637
AT2G20450			Ribosomal protein L14 (.1)		Lus10011807 [exp]	5.9	0.9627
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	6.7	0.9638
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	8.5	0.9579
AT5G59850			Ribosomal protein S8 family pr...		Lus10040309 [exp]	8.9	0.9451
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	9.5	0.9544
AT4G14320			Zinc-binding ribosomal protein...		Lus10038130 [exp]	10.2	0.9518
AT2G44120			Ribosomal protein L30/L7 famil...		Lus10004220 [exp]	11.0	0.9590

Compare expression of checked genes

Lus10023638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.