Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16070 69 / 5e-15 unknown protein AT1G15260 69 / 5e-15 unknown protein AT3G24535 69 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034910 [exp] 229 / 1e-77 AT3G16070 72 / 3e-16 unknown protein Lus10025783 [exp] 94 / 7e-24 AT1G15260 97 / 3e-25 unknown protein Lus10035880 [exp] 93 / 1e-23 AT1G15260 94 / 4e-24 unknown protein Lus10037547 [exp] 87 / 4e-21 AT1G15260 88 / 2e-21 unknown protein Lus10011448 [exp] 85 / 2e-20 AT1G15260 89 / 9e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G080001 [exp] 103 / 1e-27 AT1G15260 52 / 3e-08 unknown protein Potri.003G053600 [exp] 86 / 3e-21 AT1G15260 100 / 1e-26 unknown protein Potri.001G182500 [exp] 84 / 2e-20 AT3G16070 97 / 2e-25 unknown protein Potri.019G128400 [exp] 43 / 3e-05 AT2G30395 136 / 1e-40 ovate family protein 17 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023639 pacid=23148275 polypeptide=Lus10023639 locus=Lus10023639.g ID=Lus10023639.BGIv1.0 annot-version=v1.0 ATGTTGCTTAAAAACCCAATCTCCAACACCAAACGCTTCTTCCACAGAACCCTTCAAACCGTCAAGTCTATCTTCTCCCCCGCCATTGGTAATAATTACC ATAAGATCCCCAAATCCCCACCTCCCCCTCCCATGGATCACATCCCTACCGCCGCCGCTGCCGCTAACAACTACTCTGTTTCTACCAAAGAGAGCCCTCG GGGGGGATGCAAGAGGAAGGGTACTGGTGGTAATAATAATAATAATGATGGAGAAGAGGGAAAGAAATCGTGGTCTCGAGAGGAAAAGAGTTGGTGGGTG GCGAGGAAGTTGAAGGAGCTGGAGATGATCGATACCAGCGACGTGGATCATGTCCTCGACATCGAAGAAGTTCTTCACTACTACTCACGACTCAGCTGCC CTGAGTATCTAGACATTGTTGACAAGTTTTTCATGGATGTTTATTCCGAGTTCTTCTCTTCTTCTAATTCTCCTGTCATTCATTCAACCTCTAAGTCGTC ATCCCGTCCGTTGTTGATGCTCTGA
AA sequence Show only first row Show all	>Lus10023639 pacid=23148275 polypeptide=Lus10023639 locus=Lus10023639.g ID=Lus10023639.BGIv1.0 annot-version=v1.0 MLLKNPISNTKRFFHRTLQTVKSIFSPAIGNNYHKIPKSPPPPPMDHIPTAAAAANNYSVSTKESPRGGCKRKGTGGNNNNNDGEEGKKSWSREEKSWWV ARKLKELEMIDTSDVDHVLDIEEVLHYYSRLSCPEYLDIVDKFFMDVYSEFFSSSNSPVIHSTSKSSSRPLLML

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24535			unknown protein		Lus10023639 [exp]	0	1
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10035284 [exp]	1.4	0.8510
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	3.5	0.8506
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Lus10018776 [exp]	4.0	0.8238
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	5.7	0.8453
AT3G07720			Galactose oxidase/kelch repeat...		Lus10006392 [exp]	6.0	0.8401
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	6.7	0.8461
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	12.2	0.8389
AT2G16760			Calcium-dependent phosphotries...		Lus10015347 [exp]	13.6	0.7820
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	14.5	0.8433
AT3G47160			RING/U-box superfamily protein...		Lus10006447 [exp]	14.7	0.8432

Compare expression of checked genes

Lus10023639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.