Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18830 470 / 4e-162 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) AT4G36670 457 / 1e-157 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G16120 439 / 4e-150 ATPMT1, AtPLT1 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 1, polyol/monosaccharide transporter 1 (.1) AT2G16130 436 / 4e-149 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G18480 430 / 8e-147 AtPLT3 Major facilitator superfamily protein (.1) AT2G20780 420 / 2e-142 AtPLT4 Major facilitator superfamily protein (.1) AT2G43330 200 / 6e-58 ATINT1 inositol transporter 1 (.1) AT5G17010 192 / 6e-55 Major facilitator superfamily protein (.1.2.3.4) AT1G30220 190 / 1e-53 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT5G59250 184 / 1e-51 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040482 [exp] 483 / 3e-167 AT3G18830 722 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011288 [exp] 480 / 3e-166 AT3G18830 721 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10042339 [exp] 481 / 5e-166 AT3G18830 735 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10035255 [exp] 459 / 6e-158 AT3G18830 656 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10011287 [exp] 457 / 3e-157 AT3G18830 692 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10034623 [exp] 457 / 6e-157 AT3G18830 652 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10006971 [exp] 445 / 2e-152 AT3G18830 631 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Lus10041731 [exp] 443 / 9e-152 AT4G36670 664 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Lus10026032 [exp] 424 / 2e-144 AT4G36670 645 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G158700 [exp] 629 / 0 AT3G18830 477 / 6e-165 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.009G113600 [exp] 489 / 2e-169 AT3G18830 717 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G152300 [exp] 464 / 1e-159 AT3G18830 625 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.004G151725 [exp] 461 / 5e-159 AT3G18830 640 / 0.0 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, POLYOL TRANSPORTER 5, polyol/monosaccharide transporter 5 (.1) Potri.007G027900 [exp] 451 / 3e-155 AT4G36670 638 / 0.0 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 434 / 3e-148 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.004G039100 [exp] 407 / 2e-137 AT2G20780 647 / 0.0 Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 201 / 2e-58 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 197 / 5e-57 AT2G43330 710 / 0.0 inositol transporter 1 (.1) Potri.019G055600 [exp] 194 / 8e-56 AT5G17010 662 / 0.0 Major facilitator superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10023640 pacid=23148335 polypeptide=Lus10023640 locus=Lus10023640.g ID=Lus10023640.BGIv1.0 annot-version=v1.0 ATGGACGAGCCACCGCCTCGGCTTCTCAAATTTCAACAGCAACCGCCCGTCGACGGCGAAGCAGCTGCAGTTCCCGGCTGCAAAGCTCCACTTCTCAACC GCTATGCTCTGGCATGTGCCCTCCTCGCTTCTACTAACTCTACCCTCTTGGGCTACGATATCGGTGTGATGAGCGGAGCTGTGCTATTCATTAAAGAAAA TCTGAACATCACCTCGACCCAAGTCGAAATCCTAGTCGGAGTATTGAACATTGCTTCCCTATTCGGCTCACTGGCGTCGGGGAAGACTTCTGATTACATG GGTAGGCGTAAGACGATAGTACTTGCAGCGTTAACATTCTTAATCGGCGCAATTTTGATGGGATTCGCACCTTCCTACCCTTTCCTCCTCGCCGGAAGAA TCGTCGCCGGGATCGGAGTGGGTTACTCCCTCATGATTGCTCCAGTCTACACAGCAGAGCTCTCTCCGACCATGAGTCGCGGATTCCTAACCTCCCTCCC AGAAGTCTTCATCGTTACAGGCATCCTACTTGGCTACATCGTCAATTACGCTCTCTCAGGCATTTCGTCGAACACTAACTGGAGGATCATGTTGGGACTG TCCGCTGTACCATCTCTGCTCATCGGTTCCTTCGTCCTCGCTATGCCAGAGTCTCCCCGTTGGCTCGTGATGCAAGGGAAACCGGACGAAGCTAGAAAGG TGCTGATTAAGATCTCCAATTCCGCGCAAGAGGCTGAGCTTCGCCTTCAGGAGATAACCGATTCTGCTTCTTCGGAATTTCTACACAGCGGCATTTCATC GAGCACTTGGCGTGGGCAAGGAGTTTGGAAGGAGCTTCTGTTCAAGCCATCCAAACCCGTCCGCCGGATGCTCATCGCCGCCGTTGGAATCAACTTCTTC ATGCAGGCGTCGGGGAACGACGCCGTGATCTACTACACGCCGGAGGTGTTCCGCGCCGCCGGGATCCACAACAAGCGGCAACTGTTCGGCGTTAACGTGA TAATGGGATTATCGAAAGCTGCGTTCGTCTTGGTATCCGCGTTTTACCTGGATCGCTTCGGTAGGCGTCCGCTTCTCTTATTGGGCTCAGTTGGGATGGG CTTGTCTTTATTCATATTGGGCCTCGGGTCCAAAATCCTGCAGCATTCGGACAGTAAGCCTACATGGGCCGTAGCGATGTGCATTGTTGCGGTCTGCAGT TTTGTCTCGTTCTTTTCTATTGGGCTTGGGCCGATTACATGGGTGTACTCTTCGGAGATATTTCCGTTGAGGTTAAGGGCTCAGGGTTCGGGGCTGGCGA TATCGGTAAACCGGTTAGTAAGCGGGGTGGTTTCGATGACGTTCTTGACGATATCATCCAAGATATCGTTCGGAGGGATGTTTTTTGTGCTCGGTGGGAT CGTGGTTGTTGGGACGGTGTTCTTTTATGTGGTGTTGCCGGAGACTAAAGGGAAGAGCTTGGAGGAGATTCAGTTCCTGTTCGAGGATAAGAAGATTAAT GAGGAGGGGAAGTGA
AA sequence Show only first row Show all	>Lus10023640 pacid=23148335 polypeptide=Lus10023640 locus=Lus10023640.g ID=Lus10023640.BGIv1.0 annot-version=v1.0 MDEPPPRLLKFQQQPPVDGEAAAVPGCKAPLLNRYALACALLASTNSTLLGYDIGVMSGAVLFIKENLNITSTQVEILVGVLNIASLFGSLASGKTSDYM GRRKTIVLAALTFLIGAILMGFAPSYPFLLAGRIVAGIGVGYSLMIAPVYTAELSPTMSRGFLTSLPEVFIVTGILLGYIVNYALSGISSNTNWRIMLGL SAVPSLLIGSFVLAMPESPRWLVMQGKPDEARKVLIKISNSAQEAELRLQEITDSASSEFLHSGISSSTWRGQGVWKELLFKPSKPVRRMLIAAVGINFF MQASGNDAVIYYTPEVFRAAGIHNKRQLFGVNVIMGLSKAAFVLVSAFYLDRFGRRPLLLLGSVGMGLSLFILGLGSKILQHSDSKPTWAVAMCIVAVCS FVSFFSIGLGPITWVYSSEIFPLRLRAQGSGLAISVNRLVSGVVSMTFLTISSKISFGGMFFVLGGIVVVGTVFFYVVLPETKGKSLEEIQFLFEDKKIN EEGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10023640 [exp]	0	1
AT5G66005			Expressed protein (.1.2.3)		Lus10035990 [exp]	4.5	0.7774
AT4G35980			unknown protein		Lus10042598 [exp]	5.7	0.7811
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	6.8	0.7882
AT1G53120			RNA-binding S4 domain-containi...		Lus10005545 [exp]	10.2	0.7615
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10000989 [exp]	17.9	0.7879
AT1G55205			unknown protein		Lus10023655 [exp]	19.4	0.7490
AT3G55850		LAF3 ISF2, LAF3...	LAF3 ISOFORM 2, LONG AFTER FAR...		Lus10016328 [exp]	25.1	0.7771
AT3G09860			unknown protein		Lus10001400 [exp]	25.9	0.7759
AT5G24600			Protein of unknown function, D...		Lus10015590 [exp]	26.1	0.7538
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Lus10030773 [exp]	27.3	0.7572

Compare expression of checked genes

Lus10023640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.