Plant FIBer expression Database

Lus10023641 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19540 543 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034912
[exp]
764 / 0 AT5G19540 570 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G080900
[exp]
595 / 0 AT5G19540 597 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10023641 pacid=23148309 polypeptide=Lus10023641 locus=Lus10023641.g ID=Lus10023641.BGIv1.0 annot-version=v1.0
ATGGCGTTATCATCAGCTTCTTTCTCGATTATCTCCCCTGCCGCTTCAACCACAATTGTCGCCGATTCCACTTCCACCTCTTCTTACCCATCGAAGAAAC
CAAATCCAAACACTCTTATCTTCTCCAGACCACTCAATTTCTCTTCCTTCCACTCCTCTCCACCTTCTAGAGTCTCCGCCATTTCTTCCGGCAGCGCCAA
CTCCCCCACTTCCTACGGCGATGAGTCGCTGGAGATGTTCCTCCAGAGCAATTCCATTTCCGATTTCATGAGGTTCAAGAAAGGTCTGGATAGAGGCAGC
GGCGAGTTGCAGACGGCGCTTGTTCGCTATCGCAAGCGCTTTCCTTGGTCGATTCTCAGCCCTTTTCTTCAGCTTGATTTCGATTGCTTTGTCTCTGATG
CTTTATCCAGGTATTTTTCGATCCTCCAAAAGGAGCTCGAGACCTATGACTGTGTACTCTATGAAATGGTGGCCAGTAGAGAAAGTTTAGAGAACAGAAG
AAACTCAATTGCTTCAAGGAGACTGAAAGCCTTTCGGTCTAGAGGGGGGTTTAACATTCTAGGGTTCATTCAGCGCCAAATGGCTCGAATCCTCTCCCTT
GATTTCCAACTAGACTGCCTTGATTACCAGTCAGAGAAATGGTATCATGCCGATCTCGATTTCGAGACATTCAAGCAGCTCCAGGATGAAAAGGGTGAGA
GCGTGTTCACATTCGCGAGAGACATGACTATGAAATCGACGAAAGCCATGCTGGAGCCCAGCATACCTGAGCACCTCGGCCCTTGGAGATCAAAGCTTCT
CTGGGCATCCCGTGTTCTTCCAATGCCCCTCGTGGGCTTTTGCCTCATAGGCGCTATGTGCAATGTGGGAAGTTCAGCGTCAGAATTTCCTGAGCTAGAA
GCCCTTTCTAGGCTCGATGTTGGTGCTGCACTGAAGATCTTTCTAGCCAGGCGACTCACCTCCGAGTTAACTCAGGTGACATCTGACGTAGAAGAGAAAT
CAGTGATCATTGGAGAAAGGAACAGAGTGGCCGTTGAAGCATTAAAGAGAGCAATGGATGAAGGACACAACAAGATTGCCATACTCTACGGAGGAGGCCA
CATGCCGGATTTGGGAAGGCGACTCAGAGAGGAATTCAGTCTCGTACCTTCCAGTGTCCAGTGGGTAACCGCTTGGTCCATACAGAATCGAGATGTAAAG
ACCAGTAGCTTCCCGTTTCTGAAGAGGATGGCTGAAGTTTCAGGGTGGCCGTTGAACCGGTACCAAACTCTGGCATTGGTCATATTCTCGTCAGTGCTGG
CTGTGGATCTTGTGTTCTGGGAGATATTCGTTGGGACTTCGGTGGATTTCGTATCTGAAATCGCTTCTAGGGTGAACGAATATGCTGGTCAATACCTGGT
GTAA
AA sequence
>Lus10023641 pacid=23148309 polypeptide=Lus10023641 locus=Lus10023641.g ID=Lus10023641.BGIv1.0 annot-version=v1.0
MALSSASFSIISPAASTTIVADSTSTSSYPSKKPNPNTLIFSRPLNFSSFHSSPPSRVSAISSGSANSPTSYGDESLEMFLQSNSISDFMRFKKGLDRGS
GELQTALVRYRKRFPWSILSPFLQLDFDCFVSDALSRYFSILQKELETYDCVLYEMVASRESLENRRNSIASRRLKAFRSRGGFNILGFIQRQMARILSL
DFQLDCLDYQSEKWYHADLDFETFKQLQDEKGESVFTFARDMTMKSTKAMLEPSIPEHLGPWRSKLLWASRVLPMPLVGFCLIGAMCNVGSSASEFPELE
ALSRLDVGAALKIFLARRLTSELTQVTSDVEEKSVIIGERNRVAVEALKRAMDEGHNKIAILYGGGHMPDLGRRLREEFSLVPSSVQWVTAWSIQNRDVK
TSSFPFLKRMAEVSGWPLNRYQTLALVIFSSVLAVDLVFWEIFVGTSVDFVSEIASRVNEYAGQYLV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G19540 unknown protein Lus10023641
[exp]
0 1
AT1G69740 HEMB1 Aldolase superfamily protein (... Lus10042716
[exp]
3.0 0.8699
AT4G14210 PDE226, PDS3 PIGMENT DEFECTIVE 226, phytoen... Lus10041260
[exp]
4.6 0.8373
AT5G61410 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribul... Lus10021627
[exp]
5.8 0.8772
AT4G22260 IM1, IM IMMUTANS, Alternative oxidase ... Lus10037518
[exp]
6.3 0.8424
AT3G10230 AtLCY, LYC lycopene cyclase (.1.2) Lus10038986
[exp]
10.1 0.8721
AT2G41680 NTRC NADPH-dependent thioredoxin re... Lus10042048
[exp]
12.2 0.8417
AT1G67280 Glyoxalase/Bleomycin resistanc... Lus10043235
[exp]
12.4 0.8321
AT1G05385 Psb27-H1, LPA19 LOW PSII ACCUMULATION 19, phot... Lus10006111
[exp]
13.0 0.8096
AT1G21760 ATFBP7 F-box protein 7 (.1) Lus10029676
[exp]
15.0 0.8128
AT4G34190 SEP1 stress enhanced protein 1 (.1) Lus10019821
[exp]
15.1 0.8484

Lus10023641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.