Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023645 [exp] 167 / 2e-46 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10008360 [exp] 114 / 1e-27 AT1G55690 668 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10039271 [exp] 61 / 2e-10 AT5G56820 88 / 5e-19 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10020716 [exp] 51 / 9e-08 ND / Lus10029952 [exp] 53 / 1e-07 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10037440 [exp] 41 / 0.0001 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10030016 [exp] 42 / 0.0008 AT2G32970 799 / 0.0 unknown protein Lus10027507 [exp] 0 / 1 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023643 pacid=23148298 polypeptide=Lus10023643 locus=Lus10023643.g ID=Lus10023643.BGIv1.0 annot-version=v1.0 ATGCCGCTAGGACCAGCGCTCTGTCCGGACGATGGCGATGCGTTTGGAGATCATACCCCGATGTGGGGTTCGACGAGGAGAAAATGCCGCTCTGACTTTC ACTCCGGCGGCCAGGGTTTCCGGAAATTCGTTGAAGCAGAGTTCAGGAGGTTCTCTTGGTACAACCAATCCTCGATGCAAAGCCTAGATGTCACTATCCT GGGTTTGTATAGCCAACCTTTCCGATCCCCTGCCCTTGAGCAGCTGCTGAGTTTGGCGTCGGAGAGGAAAGCAGCGGTGGTCGCAGTTAAGCTCAAAGTT TCCAATGCCACCAACCTGAAGACGTGCTCAATCAGCTATTCATATGCCGTTGAGGAAATTGAGATTGAGGCTCCTGGACTGCTAACTCTGCAAATTGTTT GGGCGAGTAACCTCATCAAGCTTGAACTCATAACCCCTCAACTGAATCATTTAGAGATCCATGGTGCTGGTCTTCCAGGTGGCGTTCTCACTGCTGTGAT TTCTAAGCTTCCATCTCTGGAATATCTATCCTTGCGTGGACGTAGGAGGGTGGGAAAGAAGCTTAAGCTTTCAAATCCGAATCTCCAGATTGCATTTGAA GAGGGACCGTTGGCTGATCGGACTACCCCGCCACCCAACGTCAACCACTTGAAATTGCTCACAGATATGTGGTTAAAATGTGATCAAGAAACTCTTTTGG AAGCTGTATTCCGGAGATCCCGTCCCAAGTTCTTTACAGTGACTCACAAGGGTTCAGAGTCCAACCAGTTCTTCCATACCCTTTTGGATTTGATGTCACA ATACTCTTCCAGGAAACAAGGGTCCGGCGAACATGGTATATGGAACGATCAGTTGAAAGGTGTGAAAATAGTGACGGGAGATGTCGATGAGATGGAAGAA GGAGGGGAGGAGATAATGGATATTTCAAAGGATATGAATGCATTACGTGCCACCAAGAAACAAGTATGCTTCCTCTTAACTTGGCACTAA
AA sequence Show only first row Show all	>Lus10023643 pacid=23148298 polypeptide=Lus10023643 locus=Lus10023643.g ID=Lus10023643.BGIv1.0 annot-version=v1.0 MPLGPALCPDDGDAFGDHTPMWGSTRRKCRSDFHSGGQGFRKFVEAEFRRFSWYNQSSMQSLDVTILGLYSQPFRSPALEQLLSLASERKAAVVAVKLKV SNATNLKTCSISYSYAVEEIEIEAPGLLTLQIVWASNLIKLELITPQLNHLEIHGAGLPGGVLTAVISKLPSLEYLSLRGRRRVGKKLKLSNPNLQIAFE EGPLADRTTPPPNVNHLKLLTDMWLKCDQETLLEAVFRRSRPKFFTVTHKGSESNQFFHTLLDLMSQYSSRKQGSGEHGIWNDQLKGVKIVTGDVDEMEE GGEEIMDISKDMNALRATKKQVCFLLTWH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023643 [exp]	0	1
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10028572 [exp]	1.4	0.8313
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10006670 [exp]	1.7	0.8295
AT1G34150			Pseudouridine synthase family ...		Lus10023799 [exp]	4.0	0.8364
AT2G38660			Amino acid dehydrogenase famil...		Lus10043398 [exp]	9.4	0.7794
AT2G37520			Acyl-CoA N-acyltransferase wit...		Lus10016160 [exp]	9.6	0.7670
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10006212 [exp]	10.1	0.7861
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	11.3	0.8028
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Lus10015372 [exp]	16.4	0.7681
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030568 [exp]	16.6	0.7787
AT1G63110			GPI transamidase subunit PIG-U...		Lus10029590 [exp]	19.4	0.7783

Compare expression of checked genes

Lus10023643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.