Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24550 642 / 0 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT2G18470 553 / 0 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 528 / 5e-180 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT1G52290 498 / 1e-170 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G49270 495 / 1e-166 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G24540 483 / 7e-165 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G18810 485 / 1e-162 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G70460 448 / 3e-148 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 441 / 2e-145 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT4G32710 420 / 6e-142 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011098 [exp] 687 / 0 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 674 / 0 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 503 / 9e-172 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 494 / 4e-168 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 476 / 3e-164 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10042327 [exp] 479 / 6e-161 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10026335 [exp] 468 / 1e-159 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10040467 [exp] 455 / 9e-153 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10003066 [exp] 437 / 7e-144 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081300 [exp] 688 / 0 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 525 / 5e-180 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 525 / 5e-180 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.007G027000 [exp] 516 / 9e-176 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.004G153600 [exp] 515 / 4e-175 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 511 / 7e-174 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 505 / 2e-172 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 466 / 9e-155 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G111600 [exp] 442 / 2e-145 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 438 / 3e-144 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10023645 pacid=23148237 polypeptide=Lus10023645 locus=Lus10023645.g ID=Lus10023645.BGIv1.0 annot-version=v1.0 ATGTCGAGATTCTCCCTCATCACCGAGATGGGCTTCCCTTGTGATTTACAGAAATGTGAAATTAATGGCGCAGTCGCTTGTCGATGGCAGGCTGAGTTCC GCTTCTCTAACCTTGATTCCTTTGGTGGATCACCGGAACAAATGTTTGTCAGTGAAAGTGAAATGAGAAGGTTCTTCGCCAGATTTCCTCAGTTTCAAAC CGTTCACATTAACGTTTTTGGTATAAATGAGATTACATTTGAAGAGGAACCGGTTGCTCATCCGACTACTCCGCCACCCACCATCAACCACTTGAAATTG CTCACAGATATGTCGTTAGAATGTGATCAAGAAGCTCTTTTGAAAGCCGCGTTCCGGATATCACGTCCCAAGTTCTTTACAGTGACTCACGAGGCTTCAA ATTCAAACCAGTTCTTCAATACCCTTCTGGATCTGATGTCACAATACTCTTCCGGGAAACAAGGGTCCGGCGAACATGGTATATGGTACGATCAGGTGAA AAATGTGAGAATAGTGATGGGAGATGTCGATGAGATGGAAGAAGGATGGGAGATGATGGATATTTCAAAGGATATGGCTGCATTACTTGGCACCAAGAAA CGACGTGCGCATCCAGGGAATCGAACCCTGGTCAGTACCGTGGGAGGGTACTATGATACCACTACACCAGATGCGCCATCATGGCCAGAGTTAGCTTCTG AAATTGATCCATACGCTGTTCAACAACAGCAGCATTGGCAACAAGTTGCTCCTCCGCCACCGGATCGTATGGTGGCAAAGCCGCCGCCGCAGTCTCCACC GGATTCAATGCCTGCGCCACCACCACCTCCTCCGGCTTACATGAGCAGCAGTGGGGCATCGAACTATTCAGGGACTGAAACCCCGCTCCCACCACCTTCT CCGGGAATTGGGATGAGTTTCTCCAAGAGCACATTTACCTACGATGAGCTAGCAAGGGCAACCGATGGCTTCTCTGATGCTAACCTTCTTGGACAAGGTG GGTTTGGGTATGTTCATAAAGGAGTACTTCCCAATGGTAAGGAAGTAGCCATTAAGCAGCTGAAAGCAGGGAGTGGGCAAGGGGAGCGAGAGTTCCAGGC GGAGGTGGAGATCATCAGCCGTGTTCATCATAAACATCTTGTTTCGTTGGTTGGTTACTGCATCACAGGCTCGCAAAGATTGCTTGTTTATGAGTTTGTA ACTAACAACACCTTGGAGTTTCATTTGCATGGCAAAGGTCGACCGACTATGGAATGGCCTGCAAGGTTGAGAATTGCATTGGGCTCTGCAAAAGGCCTTG CATATCTCCATGAAGATTGTCATCCTAAGATCATTCATCGAGACATCAAGTCAGCAAATATACTTCTTGATTTCAAGTTCGAGGCCAAGGTTGCTGATTT TGGATTAGCTAAGTTCACCTCTGATCTAAACACTCATGTCTCCACCAGGGTGATGGGAACTTTTGGATACTTGGCTCCCGAGTATGCTTCTAGCGGAAAG CTCAGTGACAAATCAGACGTCTTCTCCTTTGGGGTAATGCTTTTAGAGCTTATTACAGGTCGCCGCCCTGTTGACACAAATCACACTTACATGGATGACA GTCTGGTTGACTGGGCAAGGCCTGTTCTTTCACGGGCTCTAGAGGATGGAAACTATGATGCTTTGGTGGATCGAAAACTCCAAAACAACTACGATCACAA CGAGATGGCTCGAATGGTCGCATGTGCAGCTGCCTGTGTCCGCCATTCGGCAAGACGCCGGCCACGTATGAGCCAAGTAGTCCGAGCTCTGGAAGGAGAT GTGTCCCTAGCAGACCTGAATGAAGGTATAAAACCAGGGCACAGCCGAATGTACGGTTCGTACGGAGAAAGCTCGGACTATGACACGAGCCAATACAATG ATGACATGAAGAAGTTCAGAAAGATGGCCCTTGGTAGCCAAGAGTATGGCGGAGGGAGCGAGTACAGCGGTCCTCCGACGAGTGATTATGGTCTGTATCC TTCGGGATCAAGCAGTGAAGGGCAGACGACAAGGGAAATAGAAATGAGAAAGGTGAAGAGGAATAGCCAAGGTTTCAGTGGAAGCACTTAG
AA sequence Show only first row Show all	>Lus10023645 pacid=23148237 polypeptide=Lus10023645 locus=Lus10023645.g ID=Lus10023645.BGIv1.0 annot-version=v1.0 MSRFSLITEMGFPCDLQKCEINGAVACRWQAEFRFSNLDSFGGSPEQMFVSESEMRRFFARFPQFQTVHINVFGINEITFEEEPVAHPTTPPPTINHLKL LTDMSLECDQEALLKAAFRISRPKFFTVTHEASNSNQFFNTLLDLMSQYSSGKQGSGEHGIWYDQVKNVRIVMGDVDEMEEGWEMMDISKDMAALLGTKK RRAHPGNRTLVSTVGGYYDTTTPDAPSWPELASEIDPYAVQQQQHWQQVAPPPPDRMVAKPPPQSPPDSMPAPPPPPPAYMSSSGASNYSGTETPLPPPS PGIGMSFSKSTFTYDELARATDGFSDANLLGQGGFGYVHKGVLPNGKEVAIKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFV TNNTLEFHLHGKGRPTMEWPARLRIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFTSDLNTHVSTRVMGTFGYLAPEYASSGK LSDKSDVFSFGVMLLELITGRRPVDTNHTYMDDSLVDWARPVLSRALEDGNYDALVDRKLQNNYDHNEMARMVACAAACVRHSARRRPRMSQVVRALEGD VSLADLNEGIKPGHSRMYGSYGESSDYDTSQYNDDMKKFRKMALGSQEYGGGSEYSGPPTSDYGLYPSGSSSEGQTTREIEMRKVKRNSQGFSGST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10023645 [exp]	0	1
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021238 [exp]	1.4	0.9241
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10011917 [exp]	4.0	0.9008
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	5.8	0.8675
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	7.2	0.9148
AT4G24430			Rhamnogalacturonate lyase fami...		Lus10030233 [exp]	9.6	0.8567
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10000111 [exp]	12.6	0.8687
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	13.5	0.8905
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	13.5	0.9079
AT2G12400			unknown protein		Lus10008028 [exp]	14.5	0.8979
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026609 [exp]	15.0	0.8451

Compare expression of checked genes

Lus10023645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.