Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19660 1446 / 0 ATSBT6.1 ,ATS1P SITE-1 protease (.1) AT1G20160 57 / 5e-08 ATSBT5.2 Subtilisin-like serine endopeptidase family protein (.1.2) AT1G04110 54 / 8e-07 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G59090 51 / 5e-06 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G67090 50 / 5e-06 Subtilisin-like serine endopeptidase family protein (.1) AT3G46840 49 / 2e-05 Subtilase family protein (.1) AT1G20150 48 / 3e-05 Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 47 / 6e-05 ATSBT5.4 Subtilase family protein (.1) AT5G03620 47 / 7e-05 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 45 / 0.0004 ATSBT4.13 subtilase 4.13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034918 [exp] 1169 / 0 AT5G19660 981 / 0.0 SITE-1 protease (.1) Lus10034919 [exp] 530 / 2e-180 AT5G19660 513 / 8e-174 SITE-1 protease (.1) Lus10006689 [exp] 68 / 3e-11 AT2G05920 563 / 0.0 Subtilase family protein (.1) Lus10007033 [exp] 65 / 3e-10 AT5G67360 551 / 0.0 Subtilase family protein (.1) Lus10028893 [exp] 62 / 3e-09 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007036 [exp] 61 / 3e-09 AT5G67360 564 / 0.0 Subtilase family protein (.1) Lus10006693 [exp] 60 / 1e-08 AT5G67360 563 / 0.0 Subtilase family protein (.1) Lus10002244 [exp] 58 / 5e-08 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10034544 [exp] 56 / 2e-07 AT1G20160 846 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081400 [exp] 1560 / 0 AT5G19660 1570 / 0.0 SITE-1 protease (.1) Potri.019G006570 [exp] 64 / 5e-10 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 59 / 2e-08 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.002G018600 [exp] 55 / 3e-07 AT1G20160 889 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.002G124500 [exp] 55 / 3e-07 AT5G67090 577 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.003G118500 [exp] 54 / 5e-07 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G026500 [exp] 54 / 7e-07 AT5G67090 604 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.005G243000 [exp] 53 / 8e-07 AT1G20160 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2) Potri.001G468800 [exp] 51 / 5e-06 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.014G171600 [exp] 50 / 6e-06 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10023646 pacid=23148343 polypeptide=Lus10023646 locus=Lus10023646.g ID=Lus10023646.BGIv1.0 annot-version=v1.0 ATGGCCGCTCGTCGGACAACTTGGAGTATCCCGGTGAAATCTTCCAGGAGTGCCGCGGCCCACCGGCGGTACTTGGAATCGGAGCTTGGACCGGGAGGAT GGAAATGGATCGAGAGGAGGAACCCGGCGATGAAGTACGCGACAGATTTTGGGGTGGTGGCTGTCGAGGAGACGGCGGTGGAGGAAGTGGTGGCGGAGAT TGAGATGTTGGAAATGGTTAAGGATGTGAATGTGGATTTCAGCTATAATAGGGAATTGCTAGGTGCTTCTCTCGCCGGCGGTGGCTCGTTTGCTGATGGG AAGAAGCGTCCTGGGAAGATATTCACTTCGATGTCTTTCAGTGAAGATGAGCATCACCCGGTGTCCGGAGAAAGTAATTCGTCCGTTAATTTGGGAAGGC AGCTGCTAGCCCAGAAGTCACAGGTGACTTCATTATTTGGAGCAGATGTTCTTTGGTCGAAAGGGTATACTGGTGCTAAGGTGAAGATGGCTATATTTGA CACTGGAATTCGATCTGATCACCCACATTTCCGTAACATTATGGAACGTACAAACTGGACCAGCGAGGATACTTTAAATGACAACCTTGGACATGGGACT TTTGTTGCTGGCGTTATTGCTGGTCAAGGTGGTGAATGTCTTGGGTTTTCCCCCGATGCTTGGGTTTATGTGTTCCGTGTATTTACAGATGCTCAGGTAT CTTACACGTCATGGTTTCTTGATGCATTTAACTACGCTATTGCAACAAAAATGGACGTACTAAATTTGAGTATTGGTGGCCCTGATTTCCTGGACCTCCC TTTTGTTGAAAAGATATGGGAGTTAACAGCCAATAACATCATTATGGTATCGGCTATTGGAAATGATGGACCTCTCTATGGTACATTAAACAATCCAGCA GATCAAAGTGATGTAATTGGGGTGGGAGGAATAGATTACAATGATCATATCGCCCCATTTTCATCACGTGGCATGAGCACTTGGGAGATTCCTCATGGAT ATGGTCGTGTGAAGCCAGATGTTGTGGCATATGGAAAAGATATCATGGGTTCGAAGATAAGTTCAGGGTGTAAAAGCTTATCTGGGACTAGTGTAGCGAG CCCTGTGGTTGCTGGTGTGGTATGCCTACTTGTCAGTGTGATCCCTGAAAGCGACCGTAAGGCAATTCTGAATCCTGCAAGCATGAAACAAGCACTTGTT GAGGGGGCTGCTAAGCTTTCTGGTCCCAATATGTATGAGCAGGGTGCAGGAAGAGTAAATCTCTCCTCGCTCAGGTTGGAGTCCTATGAAATTCTGAAGA ATTATCAACCTCGGGCAACCATCTTCCCCAGTGTTCTTGATTTTTCAGATTGCCCTTACTCCTGGCCATTCTGCCGTCAACCACTATATGCCGGGGCCAT GCCAGTTATGTTCAATGCTACGATTCTAAATGGGATGGGTGTAATTGGCTACGTCGAAGATACACCTACATGGAATCCTGTAGATGAAGACAGAGATATT TTAAGCATTCACTTTTCCTATTCAAAAATCATCTGGCCGTGGACTGGCTATATAGCACTTCATATCCAAATTAAAGAAGAAGGTGCTCAGTTTTCTGGAG AAATTGAGGGTAATGTCACTCTTACTGTGTACAGTCCTCCGGCTCCTGGTGAAAAGAAGCGAAGAAGAAGCACTTGTGTGCTTCAGCTGAAACTGCAAGT GGTTCCAACTCCACCAAGGTCAAAGAGGATATTGTGGGATCAATTTCACAATATCAAATACCCTCCAGGATATATTCCGAGAGACTCGTTGGATGTCCGC AATGATATTCTTGATTGGCATGGAGATCATCTACATACAAATTTTCATATTATGTTTAATATGTTGCGAGATGCTGGGTACTATGTCGAGACGCTCGGTT CTCCTTTCACTTGCTTTGATGCTCGCCAATATGGAACGCTCCTTCTTGTTGATCTTGAAGATGAGTACTTCCAAGAGGAAATTGAAAAACTGAGGGAGGA TGTTATTGGCAGTGGGATGGGATTAGCTGTATTTGCTGAATGGTATAACGTAGATACAATGGTGAAAATGAGATTCTTTGATGATAACACAAGAAGCTGG TGGACTCCCGTCACAGGGGGAGCAAATATTCCGGCACTGAATGATCTCCTGGCGTCATTTGGCATTGCTTTTGGGGATAAGATTTTAAATGGAGATTTCT CCATCGACGGGGAGCAAAGTCGATATGCATCTGGGACAGATATTGTGAGGTTCCCCTCAGGTGGCTATGTACACGGTTTCCCTTTTCTGGATAGCTCCGA AAGTGGGGCTACGCAGAATGTGCTGTTGAAATCAGGAACAGCGAAGGCAGATTCTCCGATTCTGGGTCTTGTGGAGGCAGGTGAAGGACGTGTTGCTGTG TACGGAGACTCCAACTGCTTGGACAGTAGCCACATGGTGACCAATTGTTACTGGCTTCTGAAGAAAATACTGGACTTCACCAGTGGGAACGTTAGAGATC CATTACTCTTCTCTGAGTCTGCGAAACAAGACATGGCCATATATGTGGATGACAACCAATTACCATCGCGTAGAACAGATGTAAATTTCTCGACTTACTC TGCAGTGGTGGAGAAGGACTTGATCTGCAGGAGGGATTCCAGATTTGAAGTATGGGAAACCAAGGGTCGCAGTCTACACGTTAGCAGACGAAACAGAAGA CTTCCCATCATAGATTTAGGAAGAAGTAGTCTGAATTCTACAGTCGACCCTTCCAATTTCAGACGTCCGAAAGTTACAGGGAGAAATCAGGGTGATATGC AAGGAAGTCATATATTCGAGATTCTGAATCGCGACGAGCTTGACGTGCCAATTCTGGTTGCAAGCCGTTGGCTTGTGCCTGCAGGAATAGCCATTTTTTT TGTTTCTCCATGCTTGTCTTCATGTTTTGTTTCGCGCGCTTTGGGTTGGTGCCGGAGGAATTAG
AA sequence Show only first row Show all	>Lus10023646 pacid=23148343 polypeptide=Lus10023646 locus=Lus10023646.g ID=Lus10023646.BGIv1.0 annot-version=v1.0 MAARRTTWSIPVKSSRSAAAHRRYLESELGPGGWKWIERRNPAMKYATDFGVVAVEETAVEEVVAEIEMLEMVKDVNVDFSYNRELLGASLAGGGSFADG KKRPGKIFTSMSFSEDEHHPVSGESNSSVNLGRQLLAQKSQVTSLFGADVLWSKGYTGAKVKMAIFDTGIRSDHPHFRNIMERTNWTSEDTLNDNLGHGT FVAGVIAGQGGECLGFSPDAWVYVFRVFTDAQVSYTSWFLDAFNYAIATKMDVLNLSIGGPDFLDLPFVEKIWELTANNIIMVSAIGNDGPLYGTLNNPA DQSDVIGVGGIDYNDHIAPFSSRGMSTWEIPHGYGRVKPDVVAYGKDIMGSKISSGCKSLSGTSVASPVVAGVVCLLVSVIPESDRKAILNPASMKQALV EGAAKLSGPNMYEQGAGRVNLSSLRLESYEILKNYQPRATIFPSVLDFSDCPYSWPFCRQPLYAGAMPVMFNATILNGMGVIGYVEDTPTWNPVDEDRDI LSIHFSYSKIIWPWTGYIALHIQIKEEGAQFSGEIEGNVTLTVYSPPAPGEKKRRRSTCVLQLKLQVVPTPPRSKRILWDQFHNIKYPPGYIPRDSLDVR NDILDWHGDHLHTNFHIMFNMLRDAGYYVETLGSPFTCFDARQYGTLLLVDLEDEYFQEEIEKLREDVIGSGMGLAVFAEWYNVDTMVKMRFFDDNTRSW WTPVTGGANIPALNDLLASFGIAFGDKILNGDFSIDGEQSRYASGTDIVRFPSGGYVHGFPFLDSSESGATQNVLLKSGTAKADSPILGLVEAGEGRVAV YGDSNCLDSSHMVTNCYWLLKKILDFTSGNVRDPLLFSESAKQDMAIYVDDNQLPSRRTDVNFSTYSAVVEKDLICRRDSRFEVWETKGRSLHVSRRNRR LPIIDLGRSSLNSTVDPSNFRRPKVTGRNQGDMQGSHIFEILNRDELDVPILVASRWLVPAGIAIFFVSPCLSSCFVSRALGWCRRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Lus10023646 [exp]	0	1
AT4G30150			unknown protein		Lus10007572 [exp]	23.9	0.8152
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10001005 [exp]	25.2	0.8048
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006875 [exp]	38.7	0.7833
AT5G22750		RAD5A, RAD5	DNA/RNA helicase protein (.1)		Lus10043365 [exp]	42.0	0.7880
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10002179 [exp]	48.7	0.7775
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	58.7	0.7879
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10004303 [exp]	66.9	0.7837
AT3G63460		EMB2221	transducin family protein / WD...		Lus10039578 [exp]	70.4	0.7792
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10011299 [exp]	72.7	0.7778
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	88.2	0.7751

Compare expression of checked genes

Lus10023646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.