Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24560 304 / 5e-97 RSY3 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034921 [exp] 446 / 8e-152 AT3G24560 676 / 0.0 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3) Lus10035028 [exp] 109 / 3e-28 AT3G24560 171 / 2e-50 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081500 [exp] 318 / 6e-102 AT3G24560 694 / 0.0 RASPBERRY 3, Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01171 [flax] [poplar] ATP_bind_3 PP-loop family
Representative CDS sequence Show only first row Show all	>Lus10023647 pacid=23148398 polypeptide=Lus10023647 locus=Lus10023647.g ID=Lus10023647.BGIv1.0 annot-version=v1.0 ATGGCTGGTCTCAAACCACACCATTCCATTGCTTTAGGAGTATCGGGTGGCCCTGACAGTATGGCACTGTGTTTCCTAACTGCCGCTTGGAAAACCGATA ATGCTGTTGGCCGGAGTTGTGGTGGCTATATTGTATCCCACCGAGTTTCATGCGTGATTGCAGAATGTAGTTGGTCAGATGGAAGGCCTAAACAAGGTCA TCTGCAAGAAGCTGCTCGCGAGGTATCAAATGTTCCAGAAAGTTTGCATTCAGCACCAGGTTGGTGTGTTGCTTATATTGCTCAACAGGCAAACGGCCAG GCCGAGTTGCTGATTCTTAGACTTTCGCGAAGTAGCGGTGTGCTAGGACTTGCAGGAATGGCATTTACTTCTGAGTTGTTCTCTTCAAGCACGGTTTTGC ATAATCAAGATACTTTCCGGTCTGAGCTACAAGCAATCATATCTTGCTGTCGCAAAACACGTGCATATATTGACCGCGTCTCCAATAATTTGATAGATCA AGCCGTGAAAATTACAGATCAAGGTTATGCTATTCTTGATTTGATGATTCTTAATCCATCACAAGTTTCTGATATATGCCTTTCAAAGTCCATTGCCTTG GTACTGCAGAGTTCTTTTACAGCAGCTGGATGCTACCTTTCCCCAGCTCCTGGATCCAGAGGAACGAAAGTCTTAGTTTGCTGTTCGGTTGATTGTCCTC GGCCTTCAAAAACGGAAGTGACTAGTAGCAAACAGAAGCAGTACGATCCTCAATGTTCGGACGGGATTATAGCCGAAGGGAAGTCATACGTGGATCAGTT CATACCAGATGTCTCAGACACCAAGTTTCTCAACAGAACATCGTGTCAATCAGTTTTAACCGAAGTCAGAAAACTCGGTCTCATCAGCGAGGCAACTTAT AGAGGTACAATCACACTGCAAAGAGATGAAACAAAGCATTTTAAGCCCGACTCCGAGAATAAGATGAACTTGGAGCAAGAAAGCACAAGGAATGATGCCA TTACAGCATCTCCAAGCAGTGAAGTAGGGCAGAGAACAGTAAAAAGTGATTGCGACTTGGCATACTTGCAACTGTTGGCACAGAAATCTCTTCCATCATT GAAATCGATCCCTGTCGCCGCCAGACGAAGCCTGCCTGTATTAGTAAATCAACAAGGAGTCTTGCTGACTATCCCAAGCATTGGATTCAAAATTTGCCCT TGTTGGATGGTTTCCTGTGCATTCAAGCCAAGAGTGCCATTAGGAGGAGGTTACACTTCATTTTTGTAG
AA sequence Show only first row Show all	>Lus10023647 pacid=23148398 polypeptide=Lus10023647 locus=Lus10023647.g ID=Lus10023647.BGIv1.0 annot-version=v1.0 MAGLKPHHSIALGVSGGPDSMALCFLTAAWKTDNAVGRSCGGYIVSHRVSCVIAECSWSDGRPKQGHLQEAAREVSNVPESLHSAPGWCVAYIAQQANGQ AELLILRLSRSSGVLGLAGMAFTSELFSSSTVLHNQDTFRSELQAIISCCRKTRAYIDRVSNNLIDQAVKITDQGYAILDLMILNPSQVSDICLSKSIAL VLQSSFTAAGCYLSPAPGSRGTKVLVCCSVDCPRPSKTEVTSSKQKQYDPQCSDGIIAEGKSYVDQFIPDVSDTKFLNRTSCQSVLTEVRKLGLISEATY RGTITLQRDETKHFKPDSENKMNLEQESTRNDAITASPSSEVGQRTVKSDCDLAYLQLLAQKSLPSLKSIPVAARRSLPVLVNQQGVLLTIPSIGFKICP CWMVSCAFKPRVPLGGGYTSFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10023647 [exp]	0	1
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	4.1	0.9388
AT5G48340			unknown protein		Lus10041085 [exp]	5.3	0.9228
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	8.8	0.9024
AT2G42130			Plastid-lipid associated prote...		Lus10016263 [exp]	10.2	0.9097
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10042026 [exp]	13.0	0.8994
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10005198 [exp]	16.0	0.8953
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	19.0	0.9023
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031195 [exp]	20.3	0.9150
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	21.5	0.8948
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Lus10011740 [exp]	22.3	0.8965

Compare expression of checked genes

Lus10023647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.