Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21222 623 / 0 protein kinase family protein (.1) AT5G25630 543 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G09900 220 / 2e-63 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G74580 218 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 214 / 6e-61 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 213 / 9e-60 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 210 / 1e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 209 / 2e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 208 / 6e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 209 / 1e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034924 [exp] 1120 / 0 AT5G21222 599 / 0.0 protein kinase family protein (.1) Lus10012037 [exp] 221 / 2e-63 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 214 / 3e-61 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10013283 [exp] 213 / 3e-60 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10008593 [exp] 209 / 1e-59 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10036020 [exp] 211 / 1e-58 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 208 / 4e-58 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022861 [exp] 204 / 1e-57 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027914 [exp] 206 / 3e-57 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081700 [exp] 800 / 0 AT5G21222 643 / 0.0 protein kinase family protein (.1) Potri.018G037200 [exp] 680 / 0 AT5G25630 694 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G032600 [exp] 253 / 2e-75 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 246 / 2e-72 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 237 / 9e-70 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G147700 [exp] 236 / 5e-69 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 230 / 3e-67 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034400 [exp] 230 / 6e-67 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050300 [exp] 228 / 3e-66 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 225 / 3e-65 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10023650 pacid=23148257 polypeptide=Lus10023650 locus=Lus10023650.g ID=Lus10023650.BGIv1.0 annot-version=v1.0 ATGGGTACATGCCAAGAAGGAACAATCTCAAACAGCCAATTGGTTGAAGCATCTGCTGTGATGGGATTGGTTGAAGCATCTGCTGTTATGGACCAATTTG GGCCATTCTCCTCAAGATCTTTGGATTTAAAGGCTCAATCTTGCTGCTCGGTATGCGCTGCCAACGATAGTTGCCAGATTGTTAAATCGAGAACGAAACT TATGAACATCTTGATTCAAAGACGGAAGCCTAGAGAAGCAGAATCCATTTTCGACGGCCTAATGGAAGAAGGCCACAAGCCTACTCTTCTAACCTACACA ACACTGGTTTCTGCCTTAACTCGGCAAAGGCGTTTCAAGTCCATCCTCTCACTCATATCTAAAGTGGAAGAGAACGGGATGAAACCTGACTCTATACTGT TCAATTCGATCATCAATGCTTTTTCCGAATCAGGAAATGTAAAAGATGCTATGAAAATCTTCCAGAAGATGAAGAGTAGTGGATGTAAGCCCAACTCGAG CACCATCAACACTCTGATCAAAGCATACGGAAACGCTGGGAAGCCAGAAGAAGCTTCGAAATTGTTGGAGTCAATGTTAAGGGATGAAAATGTGAAGCCG AACCAGAGGACATACAATATCCTAGTTAGAGCTTGGTGTAACAAGGGAAACATCGACGAGGCCTGGACTGTGATGTATAAGATGGTTGCGGCTGGTTTGA AGCCGGATGTAGTCTCATATAACATACTAGCAAAGGCTTATGTTCAAATAGGCATGACAGACAAAGCTGAGGATTTGTTGTTTGAGATTCGGAGAAGTGG ATTGGCGCCAAGCGAGCGTACCTGTGGTATCATTGTGAACGGCTATTGCAATGAAGGTAATATGGCGGAAGCCTTGAGGTTCGTATACAGGATGGAGAAG CTTGGCGTGCATCCTAATTTGGTCGTCTTCAACTCTCTCATCAAAGGTTTTTCAAGTATCATGGACAAGGATGGAGTCGACGAGGCGCTTGATGCTATGG CGGACTATGGAATCAAGCCAGATGTGGTAACATTCAGCACGGTAATGGATGCATGGGGTTCTGCAGGGCTCATGGACAAATGCCAGGAAATCTTCAATGA CATGTTGAAAGCAGGCATAGAACCTGATATCCATGCATTCAGCATTCTCGCTAAAGGTTATGTTCGAGCCGGAGAGCCAGAGAAGGCCCAGTCAGTGCTG GCTTCCATGGAACAGTACCGAGTGCGTCCAAATGTTGTGATCTGCACAACCATCATCAGTGGCTGGTGTAGTGCGGGGAAAATGGATACCGCAATGGAGG CCTACGAGAGGATGTGTGAGATTGGTGTTTCACCAAATTTACGAACTTTTGAAACTCTGATATGGGGATATGGGGAAGCCAGGCAACCGTGGAAAGCACA GGCGTTGCTGCAAGTTATGGAAGCGAAGGGCGTATCGCCTGACGATAACACAATGCAGCTTATCTCAGATGCTTGGTTCGCTGTTGGTTTAACAAGTGAT GGCAAGAGAATCGTGGATGTTGAACGATCAGATTCTGAGGTTGATGCAGATGGTACTAAGGATAACGAGTTACCGGGACAAATGTTGGAGTTGTACAAAG ACCCTGATCTCTCAGCTTCTTATTCAGAAGTCTTGGAAGTACCTGGAGACGTAGCGAACGGTCAGAATGAAGCATCTCCTGTTAAGATAAGAAGCCAAAT GATCCTCAGAGCTCCTAGGTCTTCGTCCAAGGCTCCGTTTTTGGGTCCTAGATATACGCTCTTTCTTCGTGGCTCTAGATTCGGAAGGCAGCCACTAGTT ATTTGCAACAAGCAGCAATACTGTTTCTCCGGCATTTGTGGGAAGTTCATGAGATCCTACAGCATATTCTGA
AA sequence Show only first row Show all	>Lus10023650 pacid=23148257 polypeptide=Lus10023650 locus=Lus10023650.g ID=Lus10023650.BGIv1.0 annot-version=v1.0 MGTCQEGTISNSQLVEASAVMGLVEASAVMDQFGPFSSRSLDLKAQSCCSVCAANDSCQIVKSRTKLMNILIQRRKPREAESIFDGLMEEGHKPTLLTYT TLVSALTRQRRFKSILSLISKVEENGMKPDSILFNSIINAFSESGNVKDAMKIFQKMKSSGCKPNSSTINTLIKAYGNAGKPEEASKLLESMLRDENVKP NQRTYNILVRAWCNKGNIDEAWTVMYKMVAAGLKPDVVSYNILAKAYVQIGMTDKAEDLLFEIRRSGLAPSERTCGIIVNGYCNEGNMAEALRFVYRMEK LGVHPNLVVFNSLIKGFSSIMDKDGVDEALDAMADYGIKPDVVTFSTVMDAWGSAGLMDKCQEIFNDMLKAGIEPDIHAFSILAKGYVRAGEPEKAQSVL ASMEQYRVRPNVVICTTIISGWCSAGKMDTAMEAYERMCEIGVSPNLRTFETLIWGYGEARQPWKAQALLQVMEAKGVSPDDNTMQLISDAWFAVGLTSD GKRIVDVERSDSEVDADGTKDNELPGQMLELYKDPDLSASYSEVLEVPGDVANGQNEASPVKIRSQMILRAPRSSSKAPFLGPRYTLFLRGSRFGRQPLV ICNKQQYCFSGICGKFMRSYSIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21222			protein kinase family protein ...		Lus10023650 [exp]	0	1
AT5G58330			lactate/malate dehydrogenase f...		Lus10038668 [exp]	1.7	0.9489
AT5G21222			protein kinase family protein ...		Lus10034924 [exp]	2.2	0.9350
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10037766 [exp]	2.8	0.9292
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10016906 [exp]	3.0	0.9262
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10035398 [exp]	3.2	0.9449
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10031000 [exp]	4.2	0.9412
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10017673 [exp]	4.7	0.9183
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10037875 [exp]	4.9	0.9375
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	7.3	0.9343
AT2G31890		ATRAP	RAP (.1)		Lus10033769 [exp]	7.7	0.9174

Compare expression of checked genes

Lus10023650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.